XLOC_002557 (ca9)


Basic Information

Item Value
gene id XLOC_002557
gene name ca9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6417356 ~ 6454386 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004757
AATGACAACTATGAAAAGATCCTGTCTGCTTTATCAGACGTCAGCACAGAGGAGTCGCTCACTGTGATTCCTGGTTTTAATGTGCGCCACCTTCTGCCGAACAGCTTGGAGAGGTTTTATAGGTACAGCGGGTCTCTGACGACCCCTCCTTGTCTGCAGACGGTCAGCTGGACTCTCTTCAATGACTCCATCAGAGTATCCAGAAGACAGCTCGCAGCCTTGGAGGAATCGCTGAAAACTGAACACAACAAGCTTCTGTCCAAAAACTTCAGAGCACCACAACTTTTGCATGGGAGAAAGATACAGTCGTCTTTTCACACATCTGATAGTGGAAAAACCAGAGGAGCTACACCGACAGAAACACAAGACAAGAATATCAAGGAATCTAGTGCTCATCCATCTTTAACAGGGCACATTCTGGCAGTGACCTTCGGTGTTCTGTTTGCCGCCACGTTCCTGATCTTCTCCATTTACACGTATCGACAGCACAAAAAGTACTCAAAGTTCAAAAAAGACTCCAAGCAAGATGTCATTTATAAACCAGCTCCTATAGGAAAAGACACTGATCAAACTACTGTTACTGTCTCGTGAACAAGTCACTTTTATTgttgatgatttttttattttgttttattctgatttgttgtttattttggaaTTTCTACATGTTTgcaaattagttaaaaaaaaa
>TCONS_00004758
AGAAAGAGTTACCTGTGGACAGCAGCAGCAGAACAGTGGAGTTCTTCATCATGCTGCTGGGTTTCCTCCTCATCCTTCATCTTCAGCTGCTGCTTGTCGCATCTTCATCCTCCTCTGAGGAAGACAAGAGCAGCGAGAGAGACGGACAGCACAGTAAAGgtTCTTCTCATCAGCATCACTGGGGTTACCAAgATCAGGACGCATGGTTATCTGCATTTGAACACTGTGGTGGGAAATCTCAGTCTCCGATCAACATTGACACTCATAAGGTTTTGCATGAGCCCCGACTGCCCCCCATTCAGCTGGATGGTTACGATCTTACTGGCTCACACTCTCTGACCCTCCTCAACAATGGACACACATTGCAGTTGAGTCTGCCCAGCAGCATGCGCATCAGGAGGGGATTTGATCAAGTTTATGTCGCAGCTCAGCTTCACTTTCACTGGGGAACCACAGAGGTTCCTGGTTCAGAGCACACCATAGACAACATACACTACCCTGCGGAGATTCACGTGGTCCATTATAACTCCAAATACGCAAATCTGACGGAGGCAGCTAGTAAAGCTGATGGATTGGCAGTGTTAGGAGGATTCATAGCTATTGGCCTTCATGAAAATGACAACTATGAAAAGATCCTGTCTGCTTTATCAGACGTCAGCACAGAGGAGTCGCTCACTGTGATTCCTGGTTTTAATGTGCGCCACCTTCTGCCGAACAGCTTGGAGAGGTTTTATAGGTACAGCGGGTCTCTGACGACCCCTCCTTGTCTGCAGACGGTCAGCTGGACTCTCTTCAATGACTCCATCAGAGTATCCAGAAGACAGCTCGCAGCCTTGGAGGAATCGCTGAAAACTGAACACAACAAGCTTCTGTCCAAAAACTTCAGAGCACCACAACTTTTGCATGGGAGAAAGATACAGTCGTCTTTTCACACATCTGATAGTGGAAAAACCAGAGGAGCTACACCGACAGAAACACAAGACAAGAATATCAAGGAATCTAGTGGGCACATTCTGGCAGTGACCTTCGGTGTTCTGTTTGCCGCCACGTTCCTGATCTTCTCCATTTACACGTATCGACAGCACAAAAAGTACTCAAAGTTCAAAAAAGACTCCAAGCAAGATGTCATTTATAAACCAGCTCCTATAGGAAAAGACACTGATCAAACTACTGTTACTGTCTCGTGAACAAGTCACTTTTATTgttgatgatttttttattttgttttattctgatttgttgtttattttggaaTTTCTACATGTTTgcaaattagttaaaaaaaaa
>TCONS_00004759
TCATTGTGTGCTTCAGATCAGGACGCATGGTTATCTGCATTTGAACACTGTGGTGGGAAATCTCAGTCTCCGATCAACATTGACACTCATAAGGTTTTGCATGAGCCCCGACTGCCCCCCATTCAGCTGGATGGTTACGATCTTACTGGCTCACACTCTCTGACCCTCCTCAACAATGGACACACATTGCAGTTGAGTCTGCCCAGCAGCATGCGCATCAGGAGGGGATTTGATCAAGTTTATGTCGCAGCTCAGCTTCACTTTCACTGGGGAACCACAGAGGTTCCTGGTTCAGAGCACACCATAGACAACATACACTACCCTGCGGAGATTCACGTGGTCCATTATAACTCCAAATACGCAAATCTGACGGAGGCAGCTAGTAAAGCTGATGGATTGGCAGTGTTAGGAGGATTCATAGCTATTGGCCTTCATGAAAATGACAACTATGAAAAGATCCTGTCTGCTTTATCAGACGTCAGCACAGAGGAGTCGCTCACTGTGATTCCTGGTTTTAATGTGCGCCACCTTCTGCCGAACAGCTTGGAGAGGTTTTATAGGTACAGCGGGTCTCTGACGACCCCTCCTTGTCTGCAGACGGTCAGCTGGACTCTCTTCAATGACTCCATCAGAGTATCCAGAAGACAGAAACCAGAGGAGCTACACCGACAGAAACACAAGACAAGAATATCAAGGAATCTAGTGCTCATCCATCTTTAACAGGGCACATTCTGGCAGTGACCTTCGGTGTTCTGTT

Function

symbol description
ca9 Predicted to enable carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; digestive system; eye; muscle; and renal system. Human ortholog(s) of this gene implicated in hepatitis B and renal cell carcinoma. Orthologous to human CA9 (carbonic anhydrase 9).

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016836 hydro-lyase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080818-5 Predicted to enable carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in brain; digestive system; eye; muscle; and renal system. Human ortholog(s) of this gene implicated in hepatitis B and renal cell carcinoma. Orthologous to human CA9 (carbonic anhydrase 9).

Ensembl:

ensembl_id ENSDARG00000102300

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004757 False 691 mRNA 0.42 6 6417356 6427362
TCONS_00004758 False 1287 mRNA 0.45 11 6417356 6454386
TCONS_00004759 True 757 processed_transcript 0.48 7 6417705 6431288

Neighbor

gene id symbol gene type direction distance location
XLOC_002556 NA coding downstream 7559 6389269 ~ 6409797 (-)
XLOC_002555 NA coding downstream 379610 6036881 ~ 6037746 (-)
XLOC_002554 CABZ01032180.1 coding downstream 466778 5950463 ~ 5950578 (-)
XLOC_002553 si:ch211-281k19.2 coding downstream 559808 5855259 ~ 5857548 (-)
XLOC_002552 si:ch211-281k19.2 coding downstream 562231 5852359 ~ 5855125 (-)
XLOC_002558 BX005434.1 coding upstream 18320 6472706 ~ 6472832 (-)
XLOC_002559 dcp2 coding upstream 18706 6473092 ~ 6494070 (-)
XLOC_002560 chd1 coding upstream 66990 6521376 ~ 6588793 (-)
XLOC_002561 NA coding upstream 155771 6610157 ~ 6611065 (-)
XLOC_002562 BX511100.5 coding upstream 156689 6611075 ~ 6639167 (-)
XLOC_002550 NA non-coding downstream 595772 5788620 ~ 5821584 (-)
XLOC_002547 CU466285.1 non-coding downstream 889992 5525393 ~ 5527364 (-)
XLOC_002563 BX511100.6 non-coding upstream 206673 6661059 ~ 6662868 (-)
XLOC_002564 BX511100.3 non-coding upstream 223287 6677673 ~ 6679486 (-)

Expression


Co-expression Network