G647975 (tgm2)


Basic Information

Item Value
gene id G647975
gene name tgm2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 75247068 ~ 75257239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU736440
CACCAGGGGTTATAGAGCAGCACAAAGTCCACACTGCCCCCCTGACCCAGAGTCAGGCGCCAGCGTCCGATGGGCGCGTCCGGGGGGGAACAGATGGACAGGGACACCATGTTCCCGGGGGGACTGGTGATGGCGGCGCTCCAGCAGGAGGTATTGATTTGGTCTGTCAGCCCAAAGGAGGCCTGTGTACCATACTGCTCAGAGGGCTGGGGACCTGTCTCTACGGTGAGGTCGAGGGCGCTGCCTCCAGGCTGGTAGACGCCCGAGCGGAGGTGCAGGTTGATGGTGAACGACTGGCCCCTTCTCACGATGAGGCGCTCCACCCCGTTGAGCTCCGTGCGGTGGTCTGTGTTGTTAAACTCACACTCCAGGTCCCATCGGGCAATGTCCAGTGCGTGAGCCATTATCGCGTTGACGTACTGCTGGGTAATAGTCTGTATTAGGCTGTTGAAAGTATTCTCTACTCTGCGCAGCTACTCTGACTGTGAACGAAAGTCATATTTGTAGTGGTCATGCGCGTCACCAAAATCCATTGGAAGTCGACTCCTTTCACAATTTTGCGCAAGCTGACGATATAATGCATAACGTGCGCTGGGAAGTCAACCCGAGGC

Function

symbol description
tgm2 Enables several functions, including GTP binding activity; N-acyltransferase activity; and protein-glutamine gamma-glutamyltransferase activity. Involved in several processes, including cellular calcium ion homeostasis; cellular protein modification process; and cellular response to organonitrogen compound. Located in several cellular components, including chromatin; mitochondrion; and perinuclear region of cytoplasm. Is intrinsic component of plasma membrane. Colocalizes with collagen-containing extracellular matrix.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU736440 True 611 lncRNA 0.57 3 75247068 75257239

Neighbor

gene id symbol gene type direction distance location
LOC110528488 NA coding downstream 139144 75106897 ~ 75107924 (-)
LOC110528483 LOC106583601 coding downstream 191337 74845476 ~ 75055731 (-)
LOC110528482 LOC106583600 coding downstream 409842 74829699 ~ 74837226 (-)
LOC110528480 LOC106583597 coding downstream 433706 74788801 ~ 74813362 (-)
trim107 LOC106583598 coding downstream 459691 74777397 ~ 74787377 (-)
LOC110528489 LOC106583603 coding upstream 19542 75276781 ~ 75314879 (-)
LOC110527148 LOC106583596 coding upstream 134465 75391704 ~ 75392659 (-)
LOC110528490 LOC106583604 coding upstream 228070 75485309 ~ 75491382 (-)
LOC110528491 LOC106583605 coding upstream 273138 75530377 ~ 75542507 (-)
trnaq-uug-2 NA coding upstream 449935 75707174 ~ 75707245 (-)
G647927 NA non-coding downstream 76517 75170324 ~ 75170551 (-)
G647922 NA non-coding downstream 83858 75162999 ~ 75163210 (-)
G647919 NA non-coding downstream 86445 75160334 ~ 75160623 (-)
G647918 NA non-coding downstream 87552 75159317 ~ 75159516 (-)
G647917 NA non-coding downstream 88420 75158317 ~ 75158648 (-)
G647976 NA non-coding upstream 4299 75261538 ~ 75264089 (-)
G648045 NA non-coding upstream 106203 75363442 ~ 75368846 (-)
G648075 NA non-coding upstream 161928 75419167 ~ 75421442 (-)
G648074 NA non-coding upstream 164807 75422046 ~ 75422881 (-)
G648097 NA non-coding upstream 197200 75454439 ~ 75454671 (-)
G646073 NA other downstream 1435611 73810902 ~ 73811457 (-)
G645928 NA other downstream 1552143 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2036644 73207930 ~ 73210424 (-)
G645156 NA other downstream 2528619 72717746 ~ 72718449 (-)
G649025 NA other upstream 362086 75619325 ~ 75623983 (-)
G649327 LOC106583642 other upstream 957462 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 1756189 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 2125428 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 2772005 78029244 ~ 78029753 (-)

Expression


Co-expression Network