G649215


Basic Information

Item Value
gene id G649215
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76044214 ~ 76046187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU737824
atacaatcaggaaTTCACAAAAGTCTTTGAAGTTATGTTCAGAGGCCATACCACTTTACGAATGGGATGCTGTTCACAGAAGGCTTTTGACTCTCAACCTGTGCTCAATTGTTCTACATACTATAGTCAGCTAGCTTAACAAGCTGACTCCAACAACTAAGTGCTAACTTCAAACGTTATATGCTAACTGCAGTACGGTCCAGGAACAAAAATACCTGACTTTTTTTTGTAAATCGAGTGGTAGATAATCTGATATGAACAAATCCTTGTTCACTTGTCTTTCATAGTAGAAAACTaggcattaaaaaaaatacagcctATCAAAGATACAAAATACAACAGGCATGTCAATAAATCCACATGTTAAAAAACTGGTCTTTGTGAAATCACAACagaacaacaataaaaaaaaggCATTGTCAGAGTGGAATAGACATGTACATTTTCTTTGTAATTTTACTAAAACACAATCCCAACATTTAAGACATTGTAAGTGCATTTGTGTTTTGTTTGAGTCCCATGAAGTCAACAGACAGCTTTTAAGTGCCAGTCAGAGTTTAAGACCATGAAGTCAGTTCAACTGTGCTATTAATCTGCCTTGAACCCAGCAACATTAGTTGTATTTTACCTTCATTACGTTGAAATACCCTGCTGACAACATGTAGATGCAGTGATTTACATACACATGCATAAACACTTTGTGAGTGGCCGAGCGTAGAGTAGGACCGTATGGCGGGGTGTGTGTCCTTGCCTGAAACACCTTTGGAACGTTTAATCTGACTCCTCTCTCACTAACAAGTGGTTTCCTGAATTGTCACAGTGAGTCATTAGATTCATTTCCTAATAAATGTTATCATTAGAATGACAAAGAATGAGGATGCCATCAACTTGAGATATAAATAATACCTTTTCATCTTTTCCTTAAGTGCTGTCTGAGAGGGAGTCTTACACCCCACATTTGCATTGGAAGAAAAACAACTAGAAAATCTCTGAATCACAGGGTTCTAGGCCTTCTCTATTTGCTACTTAAAAAACATGACCATTATGTATTGACATTTGATATACAATACGCAATAAATCAAACTTACAATATTTAAATCAGCTTAAAAACATGAGTATGATAATTTACAGGTTTTATTGTCAATCCCAGGTCCATTCTGTCATTCTCTCTTTGGTTCACATTACAAAATACACAGTGCAAAAAAGTCAGAACAAAGTCTTCTTTCTTTTTCTTCATTTTGTTGTCAAATGACATTATCAATAAGAGATAAGTGTCCCCCCGGTGAGGGTGCGATGTCGGTTCTCCTTCATAGTAACTTCTGTGGGGACGTGGGACTACTTCCTACTTCTCTGTGTGATTCGGTTCTGTCGGCCTGGCGATGTGCAGTGGTAGCCTGTGACCGAAGGCTAAACAAGAAGCTCACTTCCCCAGGGAGATTCTGCTTACAGCCAGTCATGTAGCTGGTCTTTGTCAAGTCACTTCATGCTACAAGTCAAGTCTCAACCCCTCCCCCCCGGTGATGTTTATAATGGTATATCTTTCCCCTCTCCAGTTTATGCTCAAGTCTGCTACTCCTCTCCTTCTGTGTCCTCACAGTTCACAATGTTACACACGAGGGAGGCATGCAGAGGCATGTCATGAAGACAGtgttcattctcctctctcttggtcctccTGTACCCTGTTAATGGGATGTGTTATCAGTGTGCGGTTGAGATGCGGTCGAATCAAGCGAGTGGTCGTAGTAAGGCCAGTAGAACTGTGTTCTGATGAGGTGTAAGAGTGTGGGAGGCGGAAGCTACTCAGTTTGCCTATAGTGGTCAGGATATGGTCTGTACAGTGTCAACTGGAGACAGTGGATTCTGGTCAAGTGAAGCAGGGCCGAGTggatcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaggtttgTCGGAAAGTGCACTTGTCTACATGGAGTCTGTGTCCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU737824 True 1974 lncRNA 0.41 1 76044214 76046187

Neighbor

gene id symbol gene type direction distance location
trnaq-uug-2 NA coding downstream 336969 75707174 ~ 75707245 (-)
LOC110528491 LOC106583605 coding downstream 501707 75530377 ~ 75542507 (-)
LOC110528490 LOC106583604 coding downstream 552832 75485309 ~ 75491382 (-)
LOC110527148 LOC106583596 coding downstream 651555 75391704 ~ 75392659 (-)
LOC110528489 LOC106583603 coding downstream 729335 75276781 ~ 75314879 (-)
LOC110528500 LOC106583615 coding upstream 861 76047048 ~ 76060389 (-)
LOC110528501 LOC106565236 coding upstream 22888 76069075 ~ 76085739 (-)
LOC110528502 LOC106565237 coding upstream 50976 76097163 ~ 76167318 (-)
LOC110528503 LOC106583643 coding upstream 132366 76178553 ~ 76192151 (-)
LOC110528506 LOC106583640 coding upstream 221463 76267650 ~ 76279500 (-)
G649202 NA non-coding downstream 67679 75976335 ~ 75976535 (-)
G649198 NA non-coding downstream 71913 75972056 ~ 75972301 (-)
G649197 NA non-coding downstream 73502 75970213 ~ 75970712 (-)
G649193 NA non-coding downstream 85686 75957589 ~ 75958528 (-)
G649192 LOC106612182 non-coding downstream 90809 75952515 ~ 75953405 (-)
G649292 NA non-coding upstream 80453 76126640 ~ 76127941 (-)
G649318 NA non-coding upstream 129775 76175962 ~ 76176181 (-)
G649320 NA non-coding upstream 131175 76177362 ~ 76177713 (-)
G649325 NA non-coding upstream 162718 76208905 ~ 76225014 (-)
G649025 NA other downstream 423277 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 936298 75106897 ~ 75107924 (-)
G646073 NA other downstream 2232757 73810902 ~ 73811457 (-)
G645928 NA other downstream 2349289 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2833790 73207930 ~ 73210424 (-)
G649327 LOC106583642 other upstream 168514 76214701 ~ 76220931 (-)
G649684 LOC100136508 other upstream 967241 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1336480 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1983057 78029244 ~ 78029753 (-)
G650763 NA other upstream 1997112 78043299 ~ 78046469 (-)

Expression


Co-expression Network