G649325


Basic Information

Item Value
gene id G649325
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 76208905 ~ 76225014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU737939
TGCATGTTGACATTGTCTTTCAAGACTTTAATCAAAGTGATCTAGAACAACGGTGATACCAGTGAAGCAGTCATTTATTCATTTTGACCGGTGTCACTGCTCAACAGTAGGCAGAAAATAACTCTTAAATACTGTCCTCTACCAGATTggatacattttacatacacaacGCAGAGGCAAACAAAACAGCAAGATCAAACTGATACAAAAGAAGCATTTATTTCATTATCCACTGAAAACttttaaagtgtgtgtgcgtgtgtcaaaTATATACAATAAATCACTACAATTAATGTTTTATGTATTCAGTCATTGGAATTACTAACAGTGTTTTCTGAAGCAGGACAGAGATTTGAATGATGGTTCAGAGGTTCTTTCTTTTGACTTCTCCTACATGCACCTTTTTGGTTAACAGTTTGGTAGAAGTTGGAACTGGGAGTTGCCTTTAAATCTAAAGTCGACGATCCCGATGTGGAGAAACGGCAAGTTCGACACCATGAGAAATACTGATATTTAAAAAATCCATTGCCCCACATTAAACTTGATTTCAATTTTCCATTTCTGAGATATCGGACAATACACACTTCTGATGAGAAATAATGCCTGGAATGTTGATGGCTTGCCAGATAAGAAAATAAACACATCTTAGGACATAGTAGTTAACTTCCACCGAGTAAAAATGATCAGCCATTTCCACCACACTGGATCAGATAATTATTGTATCCATTCAGCTGTTAACATACTACAGGAGTCATTATACgcatgtgtgtgtagatgtgtgtgtgtgtgtgtgtgtgtttaagtttgGACGAAGGGTTCGGTTCACCCCTGGTGTCTTTGGACAGAGGGACATCAGTTCTAGCCCACCACAGTGATTGGGTTAAGGGCCAGCACGTCAAACAGCACTCACCCATCCCTAGAGAGGGGTGGTGCACCTCtgaggaagacacacacagggtGCATTGTGAAAGCAGCAGTGTAACCCCGCTATCTAGCAGGCTGTCCCTTAGATAGTTAATCACCTCATATGTCTTTTATGTCCACACTACAGGCCCTCTCAGAGCATTTATTGGCTCAATCTTTCAGACAGTATTATACTGACCCACTGTTTCCCCACCCTTATTTCTAAATGTGTGGTTTCATCCGTTCagacCTGAGAAGCGATTGGTCTTGGGTATAGAATTTGAGGGGGCCAGGTTGGCGCAGAGCTACGAGGTGAGAGATCTAAGATGGAGAACAGGACAGCCCAATGGAAGAGTCAATTTCGTATGAAAATGAAAGGTAGTCAATTCATTAACAACTGTTGTCAAAGATCTGCTTGTAAACTCACAAAGGGCCGACCCACCTTGATTTTGTGCGACTCAATGAACTCAGCGTAGGAGTTGATGTAGTTGACGTTCTTGTCGCGCAGCGCCACCCGGTAGCCCCAGTTCAACGAGCCAATGTAGTTGTTCACCGCCGTCTTCATTGTCTCCCAGTTGTGCTTCACTAAGAACCAGATGAAAATTACAAAGTCAACAATGACCACACAAACGAGTCTTAAGTTCTTTACTACCATTACTGAAAAAGTCACTGAAAATGTAACATTGACATTTCCATGACCTTAAGTTACCGCAGGCTCTTGAAGAGGACTTAAA
>TU737938
TGCATGTTGACATTGTCTTTCAAGACTTTAATCAAAGTGATCTAGAACAACGGTGATACCAGTGAAGCAGTCATTTATTCATTTTGACCGGTGTCACTGCTCAACAGTAGGCAGAAAATAACTCTTAAATACTGTCCTCTACCAGATTggatacattttacatacacaacGCAGAGGCAAACAAAACAGCAAGATCAAACTGATACAAAAGAAGCATTTATTTCATTATCCACTGAAAACttttaaagtgtgtgtgcgtgtgtcaaaTATATACAATAAATCACTACAATTAATGTTTTATGTATTCAGTCATTGGAATTACTAACAGTGTTTTCTGAAGCAGGACAGAGATTTGAATGATGGTTCAGAGGTTCTTTCTTTTGACTTCTCCTACATGCACCTTTTTGGTTAACAGTTTGGTAGAAGTTGGAACTGGGAGTTGCCTTTAAATCTAAAGTCGACGATCCCGATGTGGAGAAACGGCAAGTTCGACACCATGAGAAATACTGATATTTAAAAAATCCATTGCCCCACATTAAACTTGATTTCAATTTTCCATTTCTGAGATATCGGACAATACACACTTCTGATGAGAAATAATGCCTGGAATGTTGATGGCTTGCCAGATAAGAAAATAAACACATCTTAGGACATAGTAGTTAACTTCCACCGAGTAAAAATGATCAGCCATTTCCACCACACTGGATCAGATAATTATTGTATCCATTCAGCTGTTAACATACTACAGGAGTCATTATACgcatgtgtgtgtagatgtgtgtgtgtgtgtgtgtgtgtttaagtttgGACGAAGGGTTCGGTTCACCCCTGGTGTCTTTGGACAGAGGGACATCAGTTCTAGCCCACCACAGTGATTGGGTTAAGGGCCAGCACGTCAAACAGCACTCACCCATCCCTAGAGAGGGGTGGTGCACCTCtgaggaagacacacacagggtGCATTGTGAAAGCAGCAGTGTAACCCCGCTATCTAGCAGGCTGTCCCTTAGATAGTTAATCACCTCATATGTCTTTTATGTCCACACTACAGGCCCTCTCAGAGCATTTATTGGCTCAATCTTTCAGACAGTATTATACTGACCCACTGTTTCCCCACCCTTATTTCTAAATGTGTGGTTTCATCCGTTCagacCTGAGAAGCGATTGGTCTTGGGTATAGAATTTGAGGGGGCCAGGTTGGCGCAGAGCTACGAGGTGAGAGATCTAAGATGGAGAACAGGACAGCCCGTTAAACAAGCAGGGTTTAACCTCAGCAGCCCGTCTGGGTGATGTCACCGCCTgagctcttggtcacctccatggt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU737939 False 1637 lncRNA 0.42 3 76208905 76225014
TU737938 True 1324 lncRNA 0.42 2 76223632 76225014

Neighbor

gene id symbol gene type direction distance location
LOC110528503 LOC106583643 coding downstream 16754 76178553 ~ 76192151 (-)
LOC110528502 LOC106565237 coding downstream 41587 76097163 ~ 76167318 (-)
LOC110528501 LOC106565236 coding downstream 123166 76069075 ~ 76085739 (-)
LOC110528500 LOC106583615 coding downstream 148516 76047048 ~ 76060389 (-)
trnaq-uug-2 NA coding downstream 501660 75707174 ~ 75707245 (-)
LOC110528506 LOC106583640 coding upstream 42636 76267650 ~ 76279500 (-)
LOC110528507 LOC106583638 coding upstream 58235 76283249 ~ 76328059 (-)
LOC118965404 NA coding upstream 62120 76287134 ~ 76287188 (-)
LOC110528509 LOC106583637 coding upstream 189266 76414280 ~ 76428175 (-)
LOC110528512 LOC106583634 coding upstream 245073 76470081 ~ 76608047 (-)
G649320 NA non-coding downstream 31192 76177362 ~ 76177713 (-)
G649318 NA non-coding downstream 32724 76175962 ~ 76176181 (-)
G649292 NA non-coding downstream 80964 76126640 ~ 76127941 (-)
G649215 NA non-coding downstream 162718 76044214 ~ 76046187 (-)
G649337 NA non-coding upstream 2731 76227745 ~ 76228052 (-)
G649399 NA non-coding upstream 105000 76330014 ~ 76330342 (-)
G649400 NA non-coding upstream 105781 76330795 ~ 76331027 (-)
G649413 NA non-coding upstream 124576 76349590 ~ 76349821 (-)
G649421 NA non-coding upstream 135022 76360036 ~ 76360270 (-)
G649025 NA other downstream 587968 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 1100989 75106897 ~ 75107924 (-)
G646073 NA other downstream 2397448 73810902 ~ 73811457 (-)
G645928 NA other downstream 2513980 73694573 ~ 73694925 (-)
gnrh2 gon2 other downstream 2998481 73207930 ~ 73210424 (-)
G649684 LOC100136508 other upstream 788414 77009249 ~ 77016601 (-)
LOC110529034 LOC106583646 other upstream 1157653 77380754 ~ 77390369 (-)
G650755 cbfa2t2 other upstream 1804230 78029244 ~ 78029753 (-)
G650763 NA other upstream 1818285 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 2051134 78209092 ~ 78312601 (-)

Expression


Co-expression Network