G649978 (LOC106583651)


Basic Information

Item Value
gene id G649978
gene name LOC106583651
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77288367 ~ 77344077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU738669
ATCAGCTATTACTTTATTAAATGATTTAGATCAAAAAGAATCCAATTTTTACCATACTACATCTAATATAATCTATATCTAGTCTACACACTGGAATACACCTACAGCAGTCAGACTAGGATTAACTAATGCATAGTTCTTTTACTATGAAACCTATTTTATAGCGTAACATTTCAGTCAGATTTAAGCTTCATTTGGGAAAATACGATCATTTATAAATGGAATGCGATACCTTGAAAAATTTGACCAAAAAGGTCTGCAGTAAAAAACAGTGTAGAACACAGTTGAAATGAAATTGTAAAATACAAATAGTAAAAGAGAATACAGCCATACGAATGTACACTATCTAGTACAGTTGATTTTAAAGATCACAGTATTTgattcaacaaaaatataaaacatttctcaaaaaataTAATTTCAACTTCACTGTAAATAATTGCAGAACAACATCTCACAGTTTAAACACAAAAACCAGACATTAAGAGCATAGGTGGTAATTAAAAAAGGAGACCATTGAATAACATTGAAAGGTCACATTAAAAATGACAGTGAGTGCAGTATTTAACTCATTTGACTCAACATTGAAACTGAAGCAACATCATAAATGTATCCTGAAAAAAGTGATTTTTACTCTTCATTGTGCACCGAACCGGTGCCGAGACCACGTCGCTCAATGTAGACAGTGCTTACAGGCTATTTTGCTACTTTGCGCACAGAGATCTTTTTAGCTTCTGTGACAAAGTTCCTTGCCGTATAATGTTTGAGGAGTTGTCTCCAAGCGCCACTGCGGCTCAACAACTCCTGGTTACCTTTGAGAAGGGAAGAAAATAAACGAGTACAATGACACTGTAatgtcagtgtttcccaaccctggtcctccagtacccccaataGTACTCATCTTTATTGTAAGcccacctgattcaacttgtcaactaatcatcaagccctcaatgagttgaatgaggtgtgtttgtccagggctacaatgaaaatgtgttctgttgtgggttactggaggaccagggttgggaaacattGGTTTAGATCATACTCGTTCCAGTGATCTTTAACATTTATCCCTTGAGGAAACATCTCTCTCACCGATAATGCACAGTCCCTCTTTGGCCCTGGTAATGCCCACGTTTATCTGGTTGGGGTCACGAACAAAGCCCACATGTTTGGACAGCCAGGCCCAGTCCGGCTCTGTCTCGATCTCCTTGCTGGGTAAGGAGCGCACAGTGGACAGGATGACATAGCGCCATTCACTTCCTGCATGGGAGACGAAGCAGCGTTGGTTATACCCAGGGCTAACCTAACCAGTTCAAAGTTCAAAAGGACAGCGGGGGACAACCATAGAATCACAATCAAGATGGAACTGAAGGTAAAGTAAGAAAGAGTAAAATTATCACCTTGACTTTTTGTGATGGTGGTGACCGTGATTTCGTCCAGTTTCATTTTTCTCAGTTCTTTCTTAATTTCGGCCACCTGGGCATTGTAGGGAGATAGGATCGCCATACTCTGTTGTTTTACTTTGGATTCTGTCACCAGCTGCTCGGCGAGCCGAACCTGTAATAAACAAAAAGTTGATTTTGGAATCTCGGTGTACCAGTGGCATGGCAAGATTTGAGTGTTGGAGTTGAGAAAACCAATAGGTTCCTTACCActatgtctctctcctccatattCGCTTTGGAGTTTTCATTTCCTTTTTCTGTGCTCACAACCAGGCTGACCTCTTCTCCACTGACGTTGCCGAAAACAATGTGCGTCTGCCTGCCGTCAGCCTGAAGGACACTATTTGGGCGATCCACGTCAGTCTTCAGTTTGCCTTCATAATACTCCTCTGATGGGAACTTGCATATATCTTCATGCTACAAAAATATATAAGTATTTGTATTTTCTCATTGGATATCAATCTATCTCTATCCGTATCTGTATAGTCAAAGGCACCGTAGCATTTTACCCTTGATCAACAATCATGAGATTTTATGATGTGAATTAAGAGTACCATTTTGAATGAATTCATGAAAGACTAAATATGACCCCCTCTGAAATCAAATCACAAATCAATCATGGGTAACCTACAcaaatttagcagatgttattgcgggtgtagcgaaatgcttgtgttccttagtccaacagtgcagtaatatctaacaattcaccacaatacacaaaaaaaaaaaaaaaaaaaa
>TU738670
ATCAGCTATTACTTTATTAAATGATTTAGATCAAAAAGAATCCAATTTTTACCATACTACATCTAATATAATCTATATCTAGTCTACACACTGGAATACACCTACAGCAGTCAGACTAGGATTAACTAATGCATAGTTCTTTTACTATGAAACCTATTTTATAGCGTAACATTTCAGTCAGATTTAAGCTTCATTTGGGAAAATACGATCATTTATAAATGGAATGCGATACCTTGAAAAATTTGACCAAAAAGGTCTGCAGTAAAAAACAGTGTAGAACACAGTTGAAATGAAATTGTAAAATACAAATAGTAAAAGAGAATACAGCCATACGAATGTACACTATCTAGTACAGTTGATTTTAAAGATCACAGTATTTgattcaacaaaaatataaaacatttctcaaaaaataTAATTTCAACTTCACTGTAAATAATTGCAGAACAACATCTCACAGTTTAAACACAAAAACCAGACATTAAGAGCATAGGTGGTAATTAAAAAAGGAGACCATTGAATAACATTGAAAGGTCACATTAAAAATGACAGTGAGTGCAGTATTTAACTCATTTGACTCAACATTGAAACTGAAGCAACATCATAAATGTATCCTGAAAAAAGTGATTTTTACTCTTCATTGTGCACCGAACCGGTGCCGAGACCACGTCGCTCAATGTAGACAGTGCTTACAGGCTATTTTGCTACTTTGCGCACAGAGATCTTTTTAGCTTCTGTGACAAAGTTCCTTGCCGTATAATGTTTGAGGAGTTGTCTCCAAGCGCCACTGCGGCTCAACAACTCCTGGTTACCTTTGAGAAGGGAAGAAAATAAACGAGTACAATGACACTGTAatgtcagtgtttcccaaccctggtcctccagtacccccaataGTACTCATCTTTATTGTAAGcccacctgattcaacttgtcaactaatcatcaagccctcaatgagttgaatgaggtgtgtttgtccagggctacaatgaaaatgtgttctgttgtgggttactggaggaccagggttgggaaacattGGTTTAGATCATACTCGTTCCAGTGATCTTTAACATTTATCCCTTGAGGAAACATCTCTCTCACCGATAATGCACAGTCCCTCTTTGGCCCTGGTAATGCCCACGTTTATCTGGTTGGGGTCACGAACAAAGCCCACATGTTTGGACAGCCAGGCCCAGTCCGGCTCTGTCTCGATCTCCTTGCTGGGTAAGGAGCGCACAGTGGACAGGATGACATAGCGCCATTCACTTCCTGCATGGGAGACGAAGCAGCGTTGGTTATACCCAGGGCTAACCTAACCAGTTCAAAGTTCAAAAGGACAGCGGGGGACAACCATAGAATCACAATCAAGATGGAACTGAAGGTAAAGTAAGAAAGAGTAAAATTATCACCTTGACTTTTTGTGATGGTGGTGACCGTGATTTCGTCCAGTTTCATTTTTCTCAGTTCTTTCTTAATTTCGGCCACCTGGGCATTGTAGGGAGATAGGATCGCCATACTCTGTTGTTTTACTTTGGATTCTGTCACCAGCTGCTCGGCGAGCCGAACCTGTAATAAACAAAAAGTTGATTTTGGAATCTCGGTGTACCAGTGGCATGGCAAGATTTGAGTGTTGGAGTTGAGAAAACCAATAGGTTCCTTACCActatgtctctctcctccatattCGCTTTGGAGTTTTCATTTCCTTTTTCTGTGCTCACAACCAGGCTGACCTCTTCTCCACTGACGTTGCCGAAAACAATGTGCGTCTGCCTGCCGTCAGCCTGAAGGACACTATTTGGGCGATCCACGTCAGTCTTCAGTTTGCCTTCATAATACTCCTCTGATGGGAACTTGCATATATCTTCATGCTACAAAAATATATAAGTATTTGTATTTTCTCATTGGATATCAATCTATCTCTATCCGTATCTGTATAGTCAAAGGCACCGTAGCATTTTACCCTTGATCAACAATCATGAGATTTTATGATGTGAATTAAGAGTACCATTTTGAATGAATTCATGAAAGACTAAATATGACCCCCTCTGAAATCAAATCACAAATCAATCATGGGTAACCTACAcaaatttagcagatgttattgcgggtgtagcgaaatgcttgtgttccttagtccaacagtgcagtaatatctaacaattcaccacaatacacaaaaaaaaaaaaaaaaaaa

Function

NR:

description
helicase with zinc finger domain 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU738669 False 2204 lncRNA 0.39 2 77288367 77344077
TU738670 True 2203 lncRNA 0.39 2 77288367 77344077

Neighbor

gene id symbol gene type direction distance location
helz2a helz2 coding downstream 12482 77249952 ~ 77275885 (-)
LOC110529033 LOC106583621 coding downstream 57302 77218060 ~ 77231065 (-)
LOC110528532 fndc11 coding downstream 91228 77187663 ~ 77197139 (-)
si:ch73-267c23.10 LOC106583622 coding downstream 142645 77121611 ~ 77145722 (-)
LOC110528526 NA coding downstream 176440 77106141 ~ 77111927 (-)
LOC110528536 arfrp1 coding upstream 5001 77349078 ~ 77355461 (-)
LOC110529034 LOC106583646 coding upstream 36677 77380754 ~ 77390369 (-)
LOC110528538 LOC106583648 coding upstream 60811 77404888 ~ 77463817 (-)
LOC110528539 LOC106583647 coding upstream 128626 77472703 ~ 77527363 (-)
LOC110528541 snta1 coding upstream 530535 77874612 ~ 77948295 (-)
G649997 NA non-coding downstream 76060 77211931 ~ 77212307 (-)
G649994 NA non-coding downstream 81626 77205121 ~ 77206741 (-)
G649991 NA non-coding downstream 85633 77202394 ~ 77202734 (-)
G649985 NA non-coding downstream 92482 77195544 ~ 77195885 (-)
G649984 NA non-coding downstream 93354 77194542 ~ 77195013 (-)
G650044 NA non-coding upstream 35379 77379456 ~ 77380682 (-)
G650057 NA non-coding upstream 57485 77401562 ~ 77401987 (-)
G650058 NA non-coding upstream 67315 77411392 ~ 77411620 (-)
G650062 NA non-coding upstream 70947 77415024 ~ 77415235 (-)
G649684 LOC100136508 other downstream 271766 77009249 ~ 77016601 (-)
G649327 LOC106583642 other downstream 1067436 76214701 ~ 76220931 (-)
G649025 NA other downstream 1667430 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 2180451 75106897 ~ 75107924 (-)
G646073 NA other downstream 3476910 73810902 ~ 73811457 (-)
G650755 cbfa2t2 other upstream 685167 78029244 ~ 78029753 (-)
G650763 NA other upstream 699222 78043299 ~ 78046469 (-)
eya2 LOC106583664 other upstream 932071 78209092 ~ 78312601 (-)
G652578 ncoa5 other upstream 2109998 79454075 ~ 79457103 (-)

Expression


Co-expression Network