XLOC_025599


Basic Information

Item Value
gene id XLOC_025599
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39258810 ~ 39264517 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050424
AGCGTTACGTGATCTTCGGCACACATCACTTCACTATAACTCAATATCTCACTACTTCTTGTGTCTGATTCATTCGAGAATGTTCCTGTACACGACCTTGAGCAACTGCATAAGATTTATTAACGCACGtaatttttattctgttttgtttatttgtttgagcAGATGAGCTGTTTGCTACTGAAAGAGAAACTCCTTCACTGAACACGCCTGGATGTTGGGAAACCATGAACctttaataaaaaagtttaacgATGCTACTAGCAGCCGTCAGGCTAACTAAATCACGCCAAGCCAAGGGTTAGTGACAGTAAATCCATTTTACATGATAATACCTAGTGGTGATAAAGGCCTGCAGGATTATGTTTGAACGCAATTTTTAGAGGCGATCTATACATATTGTACAGTTTATAAATGGCAGCTTTGAATATAACAGTTTATTCGTTTTTATGCACGAAATTTTGAGTAGGCTGTTTATACACCTCATACAAATGCCAAAGATCCTATGAAACCTGGCTATACCGAACCGTCCTCATGCATGATTGACGGCGCCTGGCCCAATCGTGTTCGAGAACCGTCTGTCAATAAAGGCAGTGAACCAATAGCGTTGGACCAGGAGGCGGGCCGACATGCTGTACGCGTGCCTCAGCTTGGCCGAACAAGGGCCCTGTCTTTTCGTAACCGGTGCTGTCTCATTCTCATCCGCCATGTTTAACCAGGAAGTGAGGATCTCGCCCTGCGCTCTCACACCCCGCAAAACCATTGGTGGACTGCCGCAAAGCCCGACGGTGGTCTCACTGTGAAGAGTTCCAGCACCTCGAGAGCCCGGCTCAGGGGCTTTTCCTTCGGTAAGGTACTTGCGGAAAGAAACCTTTCCAGAAATCATGACAAAATCATCAGGCCTTGCCTATCCTCTCAGAAACGGTTTTAATATGAACTCCTCGCCGTACCACCTTGACATGGATGAAGAGGGTGGCAGGAGAAAGAGTGGAGCCGTCAGCTTTCAGCAGGTGGACGTGACGATAACCTGAAAAATATCACAATAACAAACATGGAAGAAAAATGTAGTTAAGTAATATGTGCCTTACAAAAATTAaccatggattttttttttttttttttaaatagaagtaaTCATGGTTTTTGAGTTAACTATGGTTTAACTACATAATCCATGTAGTGTTTTTAAGGGGTaccaaataaatcacaatttaaaactTGACATATTTAGTTTTTTCACAACAGTTTACTTCAGAATTCCTGATTTTCTTTCAGCATTTTTCCATACAAATGAAAAGGATTCATTCAAATGCATGcctcttaagcctggtttatacttctgcatgaaGTGACCGGCGTAAACCC
>TCONS_00050425
ACTAATTTACATTTGAGAGCTAACAATAAAATACATGCACGCTCACCCGTCATCGGAGTGATGCTCTTCATTTTCACAATTGCTGCAGTGTCCATGATCCTCTTCTACCTCCTCTTCTTTCTCTGGCAGCGGTGCTGTCTCATTCTCATCCGCCATGTTTAACCAGGAAGTGAGGATCTCGCCCTGCGCTCTCACACCCCGCAAAACCATTGGTGGACTGCCGCAAAGCCCGACGGTGGTCTCACTGTGAAGAGTTCCAGCACCTCGAGAGCCCGGCTCAGGGGCTTTTCCTTCGGTAAGGTACTTGCGGAAAGAAACCTTTCCAGAAATCATGACAAAATCATCAGGCCTTGCCTATCCTCTCAGAAACGGTTTTAATATGAACTCCTCGCCGTACCACCTTGACATGGATGAAGAGGGTGGCAGGAGAAAGAGTGGAGCCGTCAGCTTTCAGCAGGTGGACGTGACGATAACCTGAAAAATATCACAATAACAAACATGGAAGAAAAATGTAGTTAAGTAATATGTGCCTTACAAAAATTAaccatggattttttttttttttttttaaatagaagtaaTCATGGTTTTTGAGTTAACTATGGTTTAACTACATAATCCATGTAGTGTTTTTAAGGGGTaccaaataaatcacaatttaaaactTGACATATTTAGTTTTTTCACAACAGTTTACTTCAGAATTCCTGATTTTCTTTCAGCATTTTTCCATACAAATGAAAAGGATTCATTCAAATGCATGcctcttaagcctggtttatacttctgcatgaaGTGACCGGCGTAAACCC
>TCONS_00050426
CtcttttatcaggggtcaccaaagagGAATGAACGCCAGGAGCAAGAACCAGTGGTCTCACTGTGAAGAGTTCCAGCACCTCGAGAGCCCGGCTCAGGGGCTTTTCCTTCGGTAAGGTACTTGCGGAAAGAAACCTTTCCAGAAATCATGACAAAATCATCAGGCCTTGCCTATCCTCTCAGAAACGGTTTTAATATGAACTCCTCGCCGTACCACCTTGACATGGATGAAGAGGGTGGCAGGAGAAAGAGTGGAGCCGTCAGCTTTCAGCAGGTGGACGTGACGATAACCTGAAAAATATCACAATAACAAACATGGAAGAAAAATGTAGTTAAGTAATATGTGCCTTACAAAAATTAaccatggattttttttttttttttttaaatagaagtaaTCATGGTTTTTGAGTTAACTATGGTTTAACTACATAATCCATGTAGTGTTTTTAAGGGGTaccaaataaatcacaatttaaaactTGACATATTTAGTTTTTTCACAACAGTTTACTTCAGAATTCCTGATTTTCTTTCAGCATTTTTCCATACAAATGAAAAGGATTCATTCAAATGCATGcctcttaagcctggtttatacttctgcatgaaGTGACCGGCGTAAACCC
>TCONS_00050427
CAGTTGTGTACATTTTACCCTAACATAAATGCGGATGGGTGTGGTCTCACTGTGAAGAGTTCCAGCACCTCGAGAGCCCGGCTCAGGGGCTTTTCCTTCGGTAAGGTACTTGCGGAAAGAAACCTTTCCAGAAATCATGACAAAATCATCAGGCCTTGCCTATCCTCTCAGAAACGGTTTTAATATGAACTCCTCGCCGTACCACCTTGACATGGATGAAGAGGGTGGCAGGAGAAAGAGTGGAGCCGTCAGCTTTCAGCAGGTGGACGTGACGATAACCTGAAAAATATCACAATAACAAACATGGAAGAAAAATGTAGTTAAGTAATATGTGCCTTACAAAAATTAaccatggattttttttttttttttttaaatagaagtaaTCATGGTTTTTGAGTTAACTATGGTTTAACTACATAATCCATGTAGTGTTTTTAAGGGGTaccaaataaatcacaatttaaaactTGACATATTTAGTTTTTTCACAACAGTTTACTTCAGAATTCCTGATTTTCTTTCAGCATTTTTCCATACAAATGAAAAGGATTCATTCAAATGCATGcctcttaagcctggtttatacttctgcatgaaGTGACCGGCGTAAACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0030289 protein phosphatase 4 complex cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0140098 catalytic activity, acting on RNA molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050424 False 1365 lncRNA 0.42 3 39258810 39264517
TCONS_00050425 False 812 lncRNA 0.42 2 39259501 39264517
TCONS_00050426 False 628 lncRNA 0.39 2 39259803 39264517
TCONS_00050427 True 617 lncRNA 0.38 2 39259852 39264517

Neighbor

gene id symbol gene type direction distance location
XLOC_025598 CR392006.1 coding upstream 75948 39182746 ~ 39182862 (+)
XLOC_025597 tmem98 coding upstream 148582 39099716 ~ 39110228 (+)
XLOC_025596 NA coding upstream 206100 39050589 ~ 39052710 (+)
XLOC_025595 kcnj19a coding upstream 399505 38793499 ~ 38859305 (+)
XLOC_025593 asic2 coding upstream 632870 37824268 ~ 38625940 (+)
XLOC_025600 zgc:165423 coding downstream 275497 39540014 ~ 39550089 (+)
XLOC_025601 BX537342.1 coding downstream 291245 39555762 ~ 39564499 (+)
XLOC_025602 aldoaa coding downstream 302482 39566999 ~ 39577052 (+)
XLOC_025603 cln3 coding downstream 314876 39579393 ~ 39599339 (+)
XLOC_025604 prpsap2 coding downstream 336045 39600562 ~ 39613226 (+)
XLOC_025429 BX649540.1 misc upstream 9009774 30248739 ~ 30249036 (+)
XLOC_025591 CR388062.4 non-coding upstream 1469865 37788861 ~ 37788945 (+)
XLOC_025590 SNORD35B non-coding upstream 1470250 37788476 ~ 37788560 (+)
XLOC_025589 CR388062.2 non-coding upstream 1470521 37788203 ~ 37788289 (+)
XLOC_025605 NA non-coding downstream 354051 39618568 ~ 39623925 (+)
XLOC_025606 NA non-coding downstream 362316 39626833 ~ 39632214 (+)
XLOC_025609 BX649356.1 non-coding downstream 620302 39884819 ~ 39884956 (+)
XLOC_025618 NA non-coding downstream 1087156 40351673 ~ 40352408 (+)

Expression


Co-expression Network