G650626


Basic Information

Item Value
gene id G650626
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 77872684 ~ 77940768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU739425
acacaataccccataatgacaaagtgaaaacctgttttagaaatgcaaatgtattgaaatgcagaaatatctaatttacataagtattcacacccatgagaatggttagaatcacctttgtcagtgattacagagtctttctgggtaaagtctctaagagctgtgcacacctggattgtacaatatttgcacatcattatttttaaaattctacaagctctgtcaagttggttgttgatcattgctagacagccattttcaagtattgACCTAACTTTAACCAGGCCACTCAGGATCATTCCATGTTGTCTTGTTAAGCAACTCCAGTTTATATTTGGccttttaggttgttgtcctgctgaaagatgaatttgtctcccagtgtctgttggaaagcagactgaaccaggatttcctttaggattttgcctgcgtTTAGTAGCTCCAttgcagatgacaagcatacccataatatgattcagccaccaccatgcttgaagatgtaaaaagtggtactcagtgaggtgttgtatttgccccaaacataacgctttgtatatAGAACATAACATTCATTTATTTTCCAAGTGTTTTGccgtattactttagtgccttattgcgaacaggatgcatgttttggaatatctttattctgtacaggctttcttcttttcactctgtcatttagtttagtattgtggagtaactacaatgttgttgatccatcctcagttttctcctatgacagccattaaactctgtaactgttttaaagtcaccattgacctcatggtgaaatccctgagcggtttccttcttctccggcaactgagttaggaaggactcctgtatctttgtatgactgggtgtattgatacaccatccaaagtgtaataagggatgtAAAATTtcagcttttttatttttacccatctaccaataggtgcccttctttgcgaagcattggaaaacctctggtctttgtggttgaatctgtttttgaaatgcactgctcgactgagggaccttacagataatacATTGTATGTctggggtacagagacgaggtcgtcattcaaaaatcatgttaaacattattattgcacacagagtgagtacatgcaacttattatgtgactgttaattaagcacatttgtactcctgaacttatttagggttgtcataacaaaggggttgaatacttattgactcaagacatttcagcttttcattttcaacaaatttgtgaacatttctaaaaacaattccactttgacattatggggtattgtgtttagatcaGTGACATAAAATCTCAATTTaacccattttaaattcaggctgtaacacaacaaaatgtggaataagtcaaggggtgtgagtactttctgaaggaactgtatgtatatatttagGTCTGGGTATAACATTATCAATTAATACATTGATAGTGTTTCATATTGAAACAGCAATGAGTTCTCAGAATATATGCAGCAGGTACTGAGATGATATATTGAAACCGTCCTTACATTGCTAGTTGAATTTGTCTTAACAACTACAGCCAAAATCACAGATGCATTTGAGAGATATCAGCTTGTTGTGGCTTAATGGTGCGGTTTTCATACAGCTTTAGTATTTTTGTTAGTGTGTGCATTTACAGAAATCATCGCAAACCAACTGAAAATGAACAAAAAAGGCATCTATATTTTACATGACAATGTGCCCCCATTTCTTTTGTGTCAATGGGATATCCACGATTCGTGGCCTTCTCTCTACAATGCTAAACAAACTTATATTAATATATTTCAAAACTAAAACTTTTTTGCTTTCACGAATACAAATGTATATTCTTATTTAAACAAAAGGTGTGCCTTGCAGGG

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU739425 True 1881 lncRNA 0.36 3 77872684 77940768

Neighbor

gene id symbol gene type direction distance location
LOC110528539 LOC106583647 coding downstream 345321 77472703 ~ 77527363 (-)
LOC110528538 LOC106583648 coding downstream 408867 77404888 ~ 77463817 (-)
LOC110529034 LOC106583646 coding downstream 482315 77380754 ~ 77390369 (-)
LOC110528536 arfrp1 coding downstream 517223 77349078 ~ 77355461 (-)
LOC118965318 NA coding downstream 568365 77301460 ~ 77304319 (-)
necab3 necab3 coding upstream 134741 78075509 ~ 78130470 (-)
eya2 LOC106583664 coding upstream 314823 78209092 ~ 78312601 (-)
gcnt7 LOC106583665 coding upstream 469797 78410565 ~ 78424121 (-)
LOC110527149 NA coding upstream 628941 78569709 ~ 78572807 (-)
LOC110528552 cdh22 coding upstream 905506 78846274 ~ 79116264 (-)
G650464 NA non-coding downstream 258593 77613583 ~ 77614091 (-)
G650139 NA non-coding downstream 401038 77471421 ~ 77471646 (-)
G650085 NA non-coding downstream 409689 77462756 ~ 77462995 (-)
G650080 NA non-coding downstream 417228 77454841 ~ 77455456 (-)
G650673 NA non-coding upstream 17129 77957897 ~ 77958109 (-)
G650727 NA non-coding upstream 23060 77963828 ~ 77964206 (-)
G650729 NA non-coding upstream 25462 77966230 ~ 77966810 (-)
G650736 NA non-coding upstream 37157 77977925 ~ 77978200 (-)
G650754 NA non-coding upstream 87467 78028235 ~ 78028540 (-)
G649684 LOC100136508 other downstream 856083 77009249 ~ 77016601 (-)
G649327 LOC106583642 other downstream 1651753 76214701 ~ 76220931 (-)
G649025 NA other downstream 2251747 75619325 ~ 75623983 (-)
LOC110528488 NA other downstream 2764768 75106897 ~ 75107924 (-)
G650755 cbfa2t2 other upstream 88476 78029244 ~ 78029753 (-)
G650763 NA other upstream 102531 78043299 ~ 78046469 (-)
G652578 ncoa5 other upstream 1513307 79454075 ~ 79457103 (-)
G653015 NA other upstream 2002433 79943201 ~ 79943728 (-)

Expression


Co-expression Network