Gene
RNA
| Item | Value |
|---|---|
| gene id | G650755 |
| gene name | cbfa2t2 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 78029244 ~ 78029753 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cbfa2t2 | Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CBFA2T2 (CBFA2/RUNX1 partner transcriptional co-repressor 2). |
| description |
|---|
| PREDICTED: protein CBFA2T2 isoform X5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU739558 | True | 474 | TUCP | 0.53 | 2 | 78029244 | 78029753 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110528541 | snta1 | coding | downstream | 80949 | 77874612 ~ 77948295 (-) |
| LOC110528539 | LOC106583647 | coding | downstream | 501881 | 77472703 ~ 77527363 (-) |
| LOC110528538 | LOC106583648 | coding | downstream | 565427 | 77404888 ~ 77463817 (-) |
| LOC110529034 | LOC106583646 | coding | downstream | 638875 | 77380754 ~ 77390369 (-) |
| LOC110528536 | arfrp1 | coding | downstream | 673783 | 77349078 ~ 77355461 (-) |
| necab3 | necab3 | coding | upstream | 45756 | 78075509 ~ 78130470 (-) |
| eya2 | LOC106583664 | coding | upstream | 225838 | 78209092 ~ 78312601 (-) |
| gcnt7 | LOC106583665 | coding | upstream | 380812 | 78410565 ~ 78424121 (-) |
| LOC110527149 | NA | coding | upstream | 539956 | 78569709 ~ 78572807 (-) |
| LOC110528552 | cdh22 | coding | upstream | 816521 | 78846274 ~ 79116264 (-) |
| G650754 | NA | non-coding | downstream | 704 | 78028235 ~ 78028540 (-) |
| G650736 | NA | non-coding | downstream | 51044 | 77977925 ~ 77978200 (-) |
| G650729 | NA | non-coding | downstream | 62434 | 77966230 ~ 77966810 (-) |
| G650727 | NA | non-coding | downstream | 65038 | 77963828 ~ 77964206 (-) |
| G650673 | NA | non-coding | downstream | 71135 | 77957897 ~ 77958109 (-) |
| G650765 | NA | non-coding | upstream | 18618 | 78048371 ~ 78049432 (-) |
| G650766 | NA | non-coding | upstream | 20503 | 78050256 ~ 78050483 (-) |
| G650781 | NA | non-coding | upstream | 29690 | 78059443 ~ 78059651 (-) |
| G650784 | NA | non-coding | upstream | 30380 | 78060133 ~ 78060398 (-) |
| G650797 | NA | non-coding | upstream | 41577 | 78071330 ~ 78071640 (-) |
| G649684 | LOC100136508 | other | downstream | 1012643 | 77009249 ~ 77016601 (-) |
| G649327 | LOC106583642 | other | downstream | 1808313 | 76214701 ~ 76220931 (-) |
| G649025 | NA | other | downstream | 2408307 | 75619325 ~ 75623983 (-) |
| LOC110528488 | NA | other | downstream | 2921328 | 75106897 ~ 75107924 (-) |
| G650763 | NA | other | upstream | 13546 | 78043299 ~ 78046469 (-) |
| G652578 | ncoa5 | other | upstream | 1424322 | 79454075 ~ 79457103 (-) |
| G653015 | NA | other | upstream | 1913448 | 79943201 ~ 79943728 (-) |
| rab22a | rab22a | other | upstream | 1996207 | 80025960 ~ 80046659 (-) |
