G650967


Basic Information

Item Value
gene id G650967
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 78154798 ~ 78182681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU739797
AGAAAGTAATAATATACTACATAAATCATAAAAGCAGCATTTATTCTGTTGCATTTGAAGTGCCTGTATAATTAGATAACTGAATGTAATCTGTAGCCCCAATTCTAAGCAGAAGAATTTTGTGAGGAATGGGTTGGTGAAAGGAATATAATTGAGGCTCCCTCAAGCCAAATGCATACACCAATGGTTTGAAATCCTTGAGAGGGACGTGCATACTCGATGAGGGAGAAACGGAATTGGGCTTGTTCAATGACAGTATGGCTAAGAAAGGCAATTCACTTTTAAGAGAACTGTAGGTACATTTTGTATCATGCTAACCTACAAGTCATTGTAACAAACATTTAACAAGCAAACACTGTTCAAGGTCAAACTGATGATTCGTACCAAAAACAAAGGAAAGTAAAATGAGTAGTATATGAATAttcaaataaaaaatttaaaaacacCGGTTTTAGATcatggaaatatcacattaaaTCCTGCTTACTGCTTTGTTATTAAAAACAAAGTAGCACTATCTTATGAAAGAAACATTAAAGAACATTACAAAGAATCTAGTAATTACTGGAAAATATGCTATTCTATGAATCAAGTGCGTTAAGTGCATTGGGGGAAAAAAACTGTAGGTAGTGCATAGTTTtaagcaggggttcccaaactcgTTCCTGGGGGCCACATTTTGGTTTACACAGcggattcaaataaccaactcatggTCACGCTTTGATTACTTGAATCCGCTGTGTAGTGCccgggcaaaaaccaaaacatgcccCCAGGACCGAGCTTGGGAAAATCTGTTCTAAACTACAGTAGCATATAAAAACTGATACAATTCTAGATTGACAGGGAGAGCAAATCCGCTTCACACCTTTTCaggtattatttatttcacttacacTAGATCTAGGAGCACATAGTTTTTAATGAAAGccaacatttatttaaaaatatttaatttcttTAAAGGTTTATAATCACTAGCTCTTGATTTAACATGGCAGAGAACCAGGACCCGTATTCACAAATAGTGCTGATCTAGgcgatatacagtaccagtcaaaagtttgaacacacatactcattcaaggtttttttttattttttactattttctacactgtagaataatagtgaagacatcaaaactatgaaataacacatatggaatcatgtagtaaccaaaatccagatatttgatattcttcaaatagccaccctttgccttgatgacagcttggcacacacttggcattctctcaaccagcttcatgaggtagttagttacctggaatgcatttcaattaacaggtgtgccttgtaaaaagtgcatttgtggaatttctttcctttttaatgtgtttgagccaatcagttgtgttgtgacaaggtaggggtggtatacaggagatagccctatttggtaaaagaccaagtacatattatggcaagaacagctcaaataagcgaagagaaacgacagtccattataactttaagacatgaaggtcagtcaatccggaaaatgtcaagaactttgaaagtttcttcaagtgcagttgcaaaaaccatcatacgttatgatgaaactggctctcatgaggaccgccacaggaaaggaagacccagttacctctgctgcagaggataagttcattagagttaactgcacctcagaaattgcagccaaagtaaatgcttcacacatctcaacataactgttcagaggagattgcgtgaatcaggccttcatggtgaaattgctgcaaataaaccactactaaaggacaccaataagaagaagagacgtgcttaggccaagaaacattagactggtggaaatctgtcctttggtctggagtccaaatttgagatttttggttccaaccgcagtgtctttgtgagacaaagagtaggtgaatggatgatctccacgtgtggtttccaccgtgaagcatggaggtggtgtgatggtgctttgctggtgacacggtctgtgatttatttagaatttaaggcacacttaaccagcatggctaatgcagcattctgcagtgatacgccatcccatctggttttcgcTTATagcacaatgacccaacacacgtCCAGGCtgcataagggctatttgaccaagaaggagagtgatgaacgCTGCAtccgatgacctggcctccacatttacccgacctcaacccaattgagatggtttgggatgaattagaccgcagagtgaaggaaaagcagccaacaagtgctcagtatatgtggggactccttcaagactgttggaaaagcattccaggtgaagctgttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaatggtggctactttgaagaagctaaaatctaaaatatatgttttggttactacatgattccatatGCGACACTTCATCcaaactcctcctccacatttactggattggttgaagaGTGGTCTTCTGGTCttgaccagtatgtaggggatctagaTTCAGgccagtatgtaggggatctagtttcaggccAGTATGTAGGTGATCTAGTTTCAGGAGTTtattttacgcctgctacgttaggttggTTTTCTAGTGAATCCACCTCTGGAGACACCTCATAATGTTTGTACATGTGACACCAGTGTTACAGTAAAGCCAAAGAGTGTAGGAGCAGTTGCTAACTAACTGGAAGTCATTGTAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU739797 True 2717 lncRNA 0.39 2 78154798 78182681

Neighbor

gene id symbol gene type direction distance location
necab3 necab3 coding downstream 24328 78075509 ~ 78130470 (-)
LOC110528541 snta1 coding downstream 206503 77874612 ~ 77948295 (-)
LOC110528539 LOC106583647 coding downstream 627435 77472703 ~ 77527363 (-)
LOC110528538 LOC106583648 coding downstream 690981 77404888 ~ 77463817 (-)
LOC110529034 LOC106583646 coding downstream 764429 77380754 ~ 77390369 (-)
eya2 LOC106583664 coding upstream 72910 78209092 ~ 78312601 (-)
gcnt7 LOC106583665 coding upstream 227884 78410565 ~ 78424121 (-)
LOC110527149 NA coding upstream 387028 78569709 ~ 78572807 (-)
LOC110528552 cdh22 coding upstream 663593 78846274 ~ 79116264 (-)
znfx1 LOC106583673 coding upstream 1079371 79262052 ~ 79275120 (-)
G650797 NA non-coding downstream 83158 78071330 ~ 78071640 (-)
G650784 NA non-coding downstream 94400 78060133 ~ 78060398 (-)
G650781 NA non-coding downstream 95147 78059443 ~ 78059651 (-)
G650766 NA non-coding downstream 104315 78050256 ~ 78050483 (-)
G650765 NA non-coding downstream 105366 78048371 ~ 78049432 (-)
G650981 NA non-coding upstream 2583 78185264 ~ 78185466 (-)
G650932 NA non-coding upstream 5567 78188248 ~ 78189145 (-)
G650983 LOC106583653 non-coding upstream 7146 78189827 ~ 78194543 (-)
G650984 NA non-coding upstream 7415 78190096 ~ 78190760 (-)
G650986 LOC106583653 non-coding upstream 11875 78194556 ~ 78195320 (-)
G650763 NA other downstream 108329 78043299 ~ 78046469 (-)
G650755 cbfa2t2 other downstream 125045 78029244 ~ 78029753 (-)
G649684 LOC100136508 other downstream 1138197 77009249 ~ 77016601 (-)
G649327 LOC106583642 other downstream 1933867 76214701 ~ 76220931 (-)
G652578 ncoa5 other upstream 1271394 79454075 ~ 79457103 (-)
G653015 NA other upstream 1760520 79943201 ~ 79943728 (-)
rab22a rab22a other upstream 1843279 80025960 ~ 80046659 (-)
G653274 NA other upstream 2163121 80345802 ~ 80347567 (-)

Expression


Co-expression Network