G650931


Basic Information

Item Value
gene id G650931
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 78163847 ~ 78168425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU739759
CAgtttatttagatttgttttttaCATGATAAAGATCCTTCATCTTCACATAAGAAAAAATAACTAGCATCCAACCATTAACTCACATTTATTCAAATGTTAGAGAGCTTTAACAATGAAAAATACTATCAACATGATTAGTTAACACCAACACATTTCTGTACATTTTATTCCTTTATGATCTGGGAACATGGCAATACTTTAAAAAAGAACAATAATTTAAAGTGGTTAATAAGCCGAGTAAGGCGCTATCACTTGTTATTTGTTAATAACAGCAATCTCTTCATGGCAGTGCACTATGAGGTGGTGAGCCAGAATGAGTGTGTGGTCAAGAAGTCTTGAGGATGCAGTGAAGCAATGGGATGTCGAAACGCCCTGACTTTACACCCAGTTATAAAGTGGTATCAGAGACGAGACAGCCACGGCACACAATACATGACGTTttgaaGTTCAAGGAGTCTTTCCAAAACAACCCAGACACTCACAGCTAAGACAGCCACTACGCTGGGGTTAACACTATTTTtgtcattcggaaagtattcagaccccttgactttttccacattttgttaagttacagccttcatctaaaattgattaaattgctttctcccccttcatcaatctacactcaaaaccacataatgaaaaagcaaaaactggtttggaCATTTTAAAAatttacaaccccccccccccccccccccccccccggaaatatcacatttacataagtattcagaccttttactcagtactttgttgaagcgcctttggcagtgattacagcctcaaatcttattgggtatgacgctacacgcttggcacacctgtatttggggagttcctcccattcttctctgcagatcctctcaagctgtcaggttggatggggagcgtcgctgcacagctattttaaggtctctccagagatgttcgatcgggttcaagcccAGGCTCTGGTTAGtccattcagagacttgtgcccaagtcactcctgcgttgtcttggaccccattctgaggtcctgagcactctggagtaggttttcatcaaggatctctctgtactttgctgcattcatctttccctaatccggactagtctcccagtccctgccgctgaaaaacatccccaaagcatgatgctgccaccaccatgcttccccataggggtggtgccaggtttcctccacagGTTACGCttcacattcaggccaaagagtttaatcttggtttcatcagaccagataatcttgtttctcatggtcagagtcctttaggtgcaatttggcaaactacaagcgggctgtcatgtgccttttattgaagagtggcttgcatctggccactctaccataaaggcctgattggtggagtgctgcagagatggctgtccttctggaaggttatcctatctccacagaagaactctggagctctgtcagtgaccatcaggttcttggtcacctcccttctcccacaattgctcagtttggatgggctgccagctctaggaaaagttttggtggttccaaacttctgccattgaagaatgatggaggccactatgttcttggggaacttcaatgctgcagaatttttttggtacccttccccaaatatGTGTCaaggcacaatcctgtctcagggctctacagacaattcctttgacctcatggcttggtttttgctctgatatccactgtcaactctgggatcttatatagacagttgcGTCTCttaccaaatcatgtcaaatcaattgaattttaccacaggtggactccaatcaagttgttgaaacatctcaaagatgatcaatggaaaccggatatAGCCAAGCTCAATTCCCGagtcatagcaaagtgtctgaatacttatgtaaataaggtatccgtTTATAATTTTTGTATAGatttgctaaaataaaaaaaattaaaaaaaatgtttttgctttgtcattatggggtattgtgtgtagatgagaattattatttaaaccattttagaataaggctgtaacgttagaaaatgtggaaaagggaaggggtctgaatactttccgtatgcACTGTATGTAAGTTGGTGTCAAATGAATTCAAATACCAGTCACTCACGACAAGGATATTACGTATGTCACTGGGACATACATATAAACACTCAGcgtccagtttattaggtacacccatctagtaccgggttggACCAGAACACCCTGACTTCTCCGGGGAATTGATCCTACAAGGTGTTGGAAATGTTaaaacgttgctcaattggtatcaagggacctaaggTGTGCctgaaaaacattccccacaccattacaccaccagcctgtactgttgacaccaggcaggatggggccatggactcatgctgcttatgccaaatcctgactgcTATCAGCATGACGGAAAAGGAACCGGGATTCATCGGACCAgccaatgtttttccactcctcaattgtccagtgttggtaaTCGCTTCTCGtgtttagctgataggagtggaacccggtgccGTTGTcagctgcaatagcccatctgcGACAAGGACCGACAAGTTGcgcgttccgagatgccgttctgtgccattatttgcctgtttgtggccggcctgttagcttgcacaattcttgccattctccttcgggCCTCTTATTAACGAGCCGTTTAGCCCAGAGGACTTCCACTGACTTAATGTTCTTTATCGCACCATTctatgtaaaccctagacactgtcgtgcgtgaaaagcccaatCGGCACGAATGGCACCGAGGATCATACCACCCTGAAAGTCGCTGAGGTAACTCCTTTTGCCAATTCTGACGTCAAATCATTGAGCAGCTGCTCTTTAACATGGTCTCTAAGCCACACCCCTTCCACCTGTGTTAGAAGCTCAGAACGAGAAAGtctaggctatatagaaataatgatgCTCAAATTGAAAATCAATTAACAAAATAATAAGGATTTATATCATcctaatcgaggtgtagattacatcacagATGCCAGTGTTCGGAATTGTAACACagctgcatgggatttctgttAATGTGACATCCAATGGCAATGTCTGCTTCAGGTAAAACCCCATcagccgcttgtggatttgacagctccaacacaGTTCCACTTcagacaccaccaaaacaacAGCTATGCGGGTGTCAGCTAGCGTAGATATGATTTAAACTAGTCCTTAATCATTAGATCTTGGAGTTGATGATAATTCTCTATACAACAAAAAAAGGTTTACCTTTCAGTGAGAGTGATTTTCACAAGCAGTTGTCATATTTCTTAATTACTGTATCTAATTCCTAAATTGACTCTTTCCTTATCGGTTGTCCTTACATTAACTTTTGATACACTGCTGACACTCCCACGTCATTAGTAACTCGTTCGGTTTGCCTTAAAAATTAAAACAATGCTATTATTGTAGACAAGTACGGTCCTAATGCCGACTGTTTGGGAAAGAAAGGGTCAAATCGCACAACAAACCAGGGTCATGGTCAGAAGGCACAAAAAcattcaaagtttaaaaaaaagatcAATGTTCTCCCATTAGGCGAAAAATGAATACGACCCTGTTTTGCTACAACAATTTCAGgctataaaaaaattaaataaaacccTTTTCAATATTCAGGGTTGAAATCAATACGTAGACTTGATTACAACTGACTTTATAAACAAAAACTTTGGATTGAGGTAATTAATGAACGTCTGGTTTATCTATATAAAGGGCATAAACATCTGACTGTAAAACTATTGCACGCCAAAAATAAAGCTTTTCATCATAACATTCACAAAAACCCTTACCACCACAACCGTGGTGTACCAGCAAAGTAAATGTTTTAAGATTCAATATTTCATCTGGAAAGCAACATGTTAAATCAACTAAAACACTCTAAATGTCACAAATTGACAAGGGGACTTTTTTGGAAGAGTCAGCAGCACACAATTCTAGCATTCATTCATACACTCAACAGTCTAAATGAAACAGCTGACATTGTAGTGAATATCTTCCGTGATTATTAACTACTGTGGTGAAGAGGTGACAGGCAGATGTGACATGGGGAGGGAacatcccctccccttcctctctctctctcttcccggaCACGTGGTCTGATTAGGCAGAATAAGGCAAGCTTCAACAGGGTTACACAGGTCAGGGGGTGAAAGCTGAATCATTCAGTATGAAGGGTCGTCACCATGGAGACAGTGATTCCACCTCAGGTTTGGGGGTCTGTATAACGTGGCTCCGGACTGACAGAAAGAGACGTGTCTGTTAGTGCCTGCCCATCTCAAGAGAGCCAGGACCTGGGGGGAAAAAGTGCAGCTGCCTGAAACCTAGACAGATCAAAGTGCGTGGAGAATGGCTCCTCATGGTGGCCATTTAGGCTGCCGTGTGTTACTACTCCTGTCCGAAGCCCTCAGTTTCCTCGATGGCAAACATCAGCTTCTCCTTCAGTTGCTCGTAGCTCTTGTAGGGGGGCAGGTCCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU739759 True 4515 lncRNA 0.43 3 78163847 78168425

Neighbor

gene id symbol gene type direction distance location
necab3 necab3 coding downstream 33377 78075509 ~ 78130470 (-)
LOC110528541 snta1 coding downstream 215552 77874612 ~ 77948295 (-)
LOC110528539 LOC106583647 coding downstream 636484 77472703 ~ 77527363 (-)
LOC110528538 LOC106583648 coding downstream 700030 77404888 ~ 77463817 (-)
LOC110529034 LOC106583646 coding downstream 773478 77380754 ~ 77390369 (-)
eya2 LOC106583664 coding upstream 87166 78209092 ~ 78312601 (-)
gcnt7 LOC106583665 coding upstream 242140 78410565 ~ 78424121 (-)
LOC110527149 NA coding upstream 401284 78569709 ~ 78572807 (-)
LOC110528552 cdh22 coding upstream 677849 78846274 ~ 79116264 (-)
znfx1 LOC106583673 coding upstream 1093627 79262052 ~ 79275120 (-)
G650797 NA non-coding downstream 92207 78071330 ~ 78071640 (-)
G650784 NA non-coding downstream 103449 78060133 ~ 78060398 (-)
G650781 NA non-coding downstream 104196 78059443 ~ 78059651 (-)
G650766 NA non-coding downstream 113364 78050256 ~ 78050483 (-)
G650765 NA non-coding downstream 114415 78048371 ~ 78049432 (-)
G650977 NA non-coding upstream 4135 78172560 ~ 78175193 (-)
G650981 NA non-coding upstream 16839 78185264 ~ 78185466 (-)
G650932 NA non-coding upstream 19823 78188248 ~ 78189145 (-)
G650983 LOC106583653 non-coding upstream 21402 78189827 ~ 78194543 (-)
G650984 NA non-coding upstream 21671 78190096 ~ 78190760 (-)
G650763 NA other downstream 117378 78043299 ~ 78046469 (-)
G650755 cbfa2t2 other downstream 134094 78029244 ~ 78029753 (-)
G649684 LOC100136508 other downstream 1147246 77009249 ~ 77016601 (-)
G649327 LOC106583642 other downstream 1942916 76214701 ~ 76220931 (-)
G652578 ncoa5 other upstream 1285650 79454075 ~ 79457103 (-)
G653015 NA other upstream 1774776 79943201 ~ 79943728 (-)
rab22a rab22a other upstream 1857535 80025960 ~ 80046659 (-)
G653274 NA other upstream 2177377 80345802 ~ 80347567 (-)

Expression


Co-expression Network