XLOC_025606


Basic Information

Item Value
gene id XLOC_025606
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39626833 ~ 39632214 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050437
GTAGGACGCCCGGTCCGGCCATCCGATATCCAGCTGCGGGATGGAGCGGTCCGAGCGGTCGGGCCAGTACTGTAGGGAAATCTCTTCCCCATCACCTTCCCAGTAAACCTCAGCATTATTTTGAGGAGATCCCGGGGAATAAACCTCCGCGGTCCCGAAAATCCTCTCAAGCTCAAGGTCCGACAGAAAGCAGCGGATGCTGTTTGTTTTGATGTAGTCCTCAAAAGCGTCCCGTCCGGCGTGGATCAGTGTCTCCAACGCGAGTCTCTGACCTTCACTGTACAAAAACTCCGGCTTGGACTCATTAGTGCGCGCGTTGATGTGATTGTCATCAAGGCACTGGACCTGTGACAGTGCCATTACTTGAGCTCAGTTGTATTTTAAACAGCATTTAACATAGTTTTGTTATTGACAGGTACAGTTTAACTGTTGAAACCACTCATTAAAATTTCGTATATTAAAAAAGACGTACGCAAACAATGTTAGATCCGGTTCCTTGAGTCACCTCTGCTCATCTGGTTGATCCTGTCAGCAATACTTTCTATTATGCGTGTTCACGACAAATGCTCAAGTTAAGCAGGTGAGCGTGCACACCTCAGTCACGTGACTAACAACCAACGAGAGAACTCGGCGTTATCAAACTTTTAGAGATTGCTGTTTTCCATGAGTTCAAACCATTGGTTCAAACATACCATGATACTTTCACAGCAGTTAGGCAGTAAAATAAGCTGCTGCGTCGTGCTGGTCTTAGTCAGTGATAAATGGGTTGGACATACTCAGGAGGGAAAAAGCCCACGCGGCCACGACAGCGACCTTTCCAGCGCTGGGAATCAGAGCAGTCCAGCAGGTCTATGACATCACCCCGCAGGAAGTGCAGCTGGGAGTTGTGCTCTGGATTGAAGTCAAACAGGGCATGTGCGTGATGAGGCCTCTGATGGGAAACAATAACAGACAAAGGTCAGCAGAGCCACTCCTGCCTTTACATTCTACACATTTACTCCACATTTTGGACATCTTCGCACTTCATATGTCTCACAAATATGAAACCCCTAAgatgttttaacagtttttaaaaacagCTGCTTTTTCCTGATATGCAAGTTTtctgtgtaagcaagtattttaaagGGGGGATTGgggtcatggccctttaaagtactgtaaatatatcagaaatgttgctgtcaatgttttcaaaccaTAATCAATTTTGAAGTCCCACCAGTGTCATAACGAAGCCTTTTTCTCATACATgcaataatgttaaataaaataaaatcagtcatttttgttttatagtgagccgactcttatcctttgattagcattatttcttttaagttgtgcagtttaattcacagaatttctacaaagtatgttgtacacTGCAAACTTGCAtactttttggtcacatcca

Function

GO:

id name namespace
GO:0010921 regulation of phosphatase activity biological_process
GO:0009451 RNA modification biological_process
GO:0051340 regulation of ligase activity biological_process
GO:0051351 positive regulation of ligase activity biological_process
GO:0098536 deuterosome cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050437 True 1417 lncRNA 0.44 2 39626833 39632214

Neighbor

gene id symbol gene type direction distance location
XLOC_025605 NA coding upstream 2908 39618568 ~ 39623925 (+)
XLOC_025604 prpsap2 coding upstream 13607 39600562 ~ 39613226 (+)
XLOC_025603 cln3 coding upstream 27494 39579393 ~ 39599339 (+)
XLOC_025602 aldoaa coding upstream 49781 39566999 ~ 39577052 (+)
XLOC_025601 BX537342.1 coding upstream 62334 39555762 ~ 39564499 (+)
XLOC_025607 epn2 coding downstream 23974 39656188 ~ 39690218 (+)
XLOC_025608 cacna1ha coding downstream 126916 39759130 ~ 39952441 (+)
XLOC_025609 BX649356.1 coding downstream 252605 39884819 ~ 39884956 (+)
XLOC_025610 ccdc97 coding downstream 326193 39958407 ~ 39967412 (+)
XLOC_025611 gfer coding downstream 530185 40162399 ~ 40168482 (+)
XLOC_025429 BX649540.1 misc upstream 9377797 30248739 ~ 30249036 (+)
XLOC_025599 NA non-coding upstream 362316 39258810 ~ 39264517 (+)
XLOC_025598 CR392006.1 non-coding upstream 443971 39182746 ~ 39182862 (+)
XLOC_025596 NA non-coding upstream 574123 39050589 ~ 39052710 (+)
XLOC_025618 NA non-coding downstream 719459 40351673 ~ 40352408 (+)
XLOC_025619 NA non-coding downstream 771955 40404169 ~ 40404939 (+)
XLOC_025623 BX649559.1 non-coding downstream 1159506 40791720 ~ 40794879 (+)
XLOC_025627 NA non-coding downstream 1266410 40898624 ~ 40902157 (+)

Expression


Co-expression Network