Fish Transcriptome and Expression Database

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model fish

XLOC_025609 (BX649356.1)

Basic Information

Item	Value
gene id	XLOC_025609
gene name	BX649356.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	39884819 ~ 39884956 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050446
TCACAGTTTAATCTATgttataaaatgcataaaaagttgtCTGGTACATtaaccggttactcactgaagctaagcatggctgagcctggtcagtacctggatgggagactacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083829

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050446	True	138	rRNA	0.41	1	39884819	39884956

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025607	epn2	coding	upstream	194601	39656188 ~ 39690218 (+)
XLOC_025606	NA	coding	upstream	252605	39626833 ~ 39632214 (+)
XLOC_025605	NA	coding	upstream	260894	39618568 ~ 39623925 (+)
XLOC_025604	prpsap2	coding	upstream	271593	39600562 ~ 39613226 (+)
XLOC_025603	cln3	coding	upstream	285480	39579393 ~ 39599339 (+)
XLOC_025610	ccdc97	coding	downstream	73451	39958407 ~ 39967412 (+)
XLOC_025611	gfer	coding	downstream	277443	40162399 ~ 40168482 (+)
XLOC_025612	syngr3a	coding	downstream	285260	40170216 ~ 40180201 (+)
XLOC_025613	smcr8a	coding	downstream	370452	40255408 ~ 40258950 (+)
XLOC_025614	bud31	coding	downstream	399642	40284598 ~ 40287841 (+)
XLOC_025429	BX649540.1	misc	upstream	9635783	30248739 ~ 30249036 (+)
XLOC_025601	BX537342.1	non-coding	upstream	320320	39555762 ~ 39564499 (+)
XLOC_025599	NA	non-coding	upstream	620302	39258810 ~ 39264517 (+)
XLOC_025598	CR392006.1	non-coding	upstream	701957	39182746 ~ 39182862 (+)
XLOC_025618	NA	non-coding	downstream	466717	40351673 ~ 40352408 (+)
XLOC_025619	NA	non-coding	downstream	519213	40404169 ~ 40404939 (+)
XLOC_025623	BX649559.1	non-coding	downstream	906764	40791720 ~ 40794879 (+)
XLOC_025627	NA	non-coding	downstream	1013668	40898624 ~ 40902157 (+)
XLOC_025628	NA	non-coding	downstream	1060084	40945040 ~ 40948999 (+)

Expression

Co-expression Network