XLOC_002561


Basic Information

Item Value
gene id XLOC_002561
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6610157 ~ 6611065 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005993
aaatgttcaaacgtttatctgcctcctagagtctttctggtagaacaaTTTTTCTCGCTCTGGAGCTTCTGTTAAGAAATCTATGAGTAAAttataactttaaacatttaacaacaaTTTTTCATATGAACTGAGTAATTTCTGTTTGTGAATTGGCAGTCGTTTCACAGGAAATTGTTATTGGAACAGGCCCTTTCTTAACAAGCTCAGAGTGCTCATCATCTGACGAGTGTTTTGGTGAGACAGCAGGAGGAAGCTGCGTTTCGTTGTTTGTCATATTTAtaccttttttttctaaatgttctCAATTCTTACTCCTGCACGCTTCACCTGCCTCTACTCTGATTTCTGGCAGACTGGTGTCACTAAAatctctgtgattgtgaacaacagcaagaaaataaaaaacgGTCCATTTGAAATAATCCTTCTGAAAGTGTGATGAAAGTGAgcagtaaaagtgtttttttgtttgtgattttATATTTAACCTCAAGCCATTCCAGACCCAGGAGTGCTGCTTTCACCCAGACAGCAGCTCTGGACACAGACACACAGGACGGCACCGCTGAGCTTCCTGGATATTTGGCTCCTCTGTCTTCACATTTGGCTgattctgcatccacagaccagAGGAACAGCAAGAGAAAAAGGCAAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCggccaaacgctctcgcagagacttgtacctgaagggcccgttgctggggcgaggtggattcggctctgGGTTTGCTGGGGtccgcaggtctga

Function

GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005993 True 791 lncRNA 0.44 2 6610157 6611065

Neighbor

gene id symbol gene type direction distance location
XLOC_002560 chd1 coding downstream 21364 6521376 ~ 6588793 (-)
XLOC_002559 dcp2 coding downstream 116087 6473092 ~ 6494070 (-)
XLOC_002558 BX005434.1 coding downstream 137325 6472706 ~ 6472832 (-)
XLOC_002557 ca9 coding downstream 155771 6417356 ~ 6454386 (-)
XLOC_002556 NA coding downstream 200360 6389269 ~ 6409797 (-)
XLOC_002562 BX511100.5 coding upstream 10 6611075 ~ 6639167 (-)
XLOC_002563 BX511100.6 coding upstream 49994 6661059 ~ 6662868 (-)
XLOC_002564 BX511100.3 coding upstream 66608 6677673 ~ 6679486 (-)
XLOC_002565 NA coding upstream 82449 6693514 ~ 6695332 (-)
XLOC_002566 BX511100.4 coding upstream 114592 6725657 ~ 6727114 (-)
XLOC_002555 NA non-coding downstream 572411 6036881 ~ 6037746 (-)
XLOC_002554 CABZ01032180.1 non-coding downstream 659579 5950463 ~ 5950578 (-)
XLOC_002550 NA non-coding downstream 788573 5788620 ~ 5821584 (-)

Expression


Co-expression Network