G652578 (ncoa5)


Basic Information

Item Value
gene id G652578
gene name ncoa5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 79454075 ~ 79457103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU741553
CACATTCAAAAATTGTTTATTTCAGGAGCACTGCTAGTACAATCACACAGGAAGTTGTATAAAAGTTTTGCTGTGTAGAACTGGCCCACACCGACACCAGATCTAGCCATCAAACATTGTGGTTGAGCAGAGAACAACAAGTTCAGCACAATCCTGAATATCTTCGGACATGCAATTAACTTTTTACAACAAATCACACTAACCAGAAAATGGAGAGACTGGTTACAACCGAAAATGTCTGACTTTCAAATAGTCTTACCAAATAACCGAGGTCTGTCATTACAATACCTAGGGTAAAAAAAGGGTCCTCTAAAAGCATTtacaaatgcaaaaaaaaacacaaaaaaacagaaaatatcAGTCTACATCTACACATTTCAACTGTGGTAAATTAATTTAACAAAAGCTGCTTTGCAGACTCATGGGTTGGGTGTGGTCACATTATGAGGGGAATCATCAGTAATGGCGAGGGTACATTGCCATGGGCGGAGGCTGACCCATGCCTTGGCCCATGCCCTGGCCCATGCCTTGGCCCATGCCCTGGCCCATGCCCTGGCCCATGCCCTGGCCCATGCCATGACTTGGTCTGGGGGATGCCGAATTCCCAGCATTTACCAAGTGGTTGAGAGAGGGTCCACTTTGAATGAGCGTGTCCAGGGCTTTCTGGACGCTGGGGTTGTCGAAGTTGATGCCCGCTCCCCCTGAGACAGGAGGTCTCTGCCCCCCCTGAGGGGCAGCCATGCGGCCTGTGGGTGACCCATAGCCTTGGTGGATACCGAGGGGCACCGGGCCCGGGCGCATGGGGGGCCGGGCACCCATCATGTTGGGGACTTGGGAAGGTGTGGTGGCCATTTTGGGGACAGGAGAGGCTGAGGACATGGGGAGGCCTGTGGACTGGATGCCCATGGTGGAGCCGTAGGACTGGGGGACCATGGCGGGGCTGGCAGCGGAGGCCGATGCCCCGGCGCCACTGTTGAACAGGCTGAGGATCTTAGCCTGCAGCTCCTGCTGGTTGTTAGAGGTGGCGTTGGGGGCCGGCGGCATGCTCATGTGGGTGGAGTGGGCACTGTGTGGGGGTGGTGCGTGACCGGGATGGACTGCAGGGGGCATCGTCTGGGCCTGGAGAGTAGGCTCGTGGGTGGCTGCGGTCGCCGGGGGATGCGCTGCAAGTGGGTCGGCTCTTACGATGCGTTCCCTCTTGACCCTCAAATACTCTATAAGACTATCCAGCTCCTCTGGAGTCAGGAAGATGAGGTCCACCACCATACCCAGATCACGCACCTTCCGCCCCACTGTCTCCGCATACT
>TU741554
CTCAGACAGCAGAGTGATGGCAGGAAGCAGGGTGACCGGGTGGccctctctctcatgctccctcATCAGCACGTCGTCAGCCATCTTGGCAGCCTTCTGAGCGATCTCCTCACGCTCCTTCTCACGATGTTCCACCTTGAAGGAGTCATAGTTGTGGCCCACCAGGACCATGGCATCCTCCATGGGCATGTTGCGATGCTCTTGGGGTGTGCCGAAGAGGATGTTGACTGTGCAGGAGCGGTGCACCTGGTGCTGCTGAGTGATGATTATGGCGAAAGGGGTGCGCGCCCGGCCCACGTCCTCCAGTGCCTGGGTCAGGGACACCTCCGTGTTGAGGAAGATGAGGTCCACCACCATACCCAGATCACGCACCTTCCGCCCCACTGTCTCCGCATACT

Function

symbol description
ncoa5 Orthologous to human NCOA5 (nuclear receptor coactivator 5).

NR:

description
nuclear receptor coactivator 5 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU741553 False 1307 lncRNA 0.54 3 79454075 79457103
TU741554 True 398 TUCP 0.60 2 79454075 79455388

Neighbor

gene id symbol gene type direction distance location
ctsa ctsa coding downstream 14160 79421285 ~ 79439915 (-)
pcif1 LOC106583676 coding downstream 69146 79359044 ~ 79384929 (-)
LOC110528560 dnttip1 coding downstream 95436 79346644 ~ 79358639 (-)
ube2c ube2c coding downstream 107783 79342282 ~ 79346292 (-)
snrpb snrpb coding downstream 142174 79308233 ~ 79311901 (-)
LOC110529040 LOC106565077 coding upstream 234 79457337 ~ 79724304 (-)
LOC110528565 dok5 coding upstream 276609 79733712 ~ 79741993 (-)
LOC100136661 LOC106583685 coding upstream 288491 79745594 ~ 79757141 (-)
LOC110528568 LOC106583688 coding upstream 533496 79990599 ~ 80025187 (-)
rab22a rab22a coding upstream 574863 80025960 ~ 80046659 (-)
G652335 NA non-coding downstream 66679 79386931 ~ 79387396 (-)
G652314 NA non-coding downstream 132455 79321375 ~ 79321620 (-)
LOC110528554 NA non-coding downstream 177392 79275251 ~ 79277209 (-)
G652268 LOC106604946 non-coding downstream 229754 79224048 ~ 79224321 (-)
G652266 NA non-coding downstream 232508 79221338 ~ 79221567 (-)
G652589 NA non-coding upstream 8344 79465447 ~ 79466226 (-)
G652597 NA non-coding upstream 21666 79478769 ~ 79481328 (-)
G652599 NA non-coding upstream 36019 79493122 ~ 79494836 (-)
G652629 NA non-coding upstream 97921 79555024 ~ 79555564 (-)
G652656 NA non-coding upstream 131980 79589083 ~ 79589656 (-)
eya2 LOC106583664 other downstream 1141573 78209092 ~ 78312601 (-)
G650763 NA other downstream 1407606 78043299 ~ 78046469 (-)
G650755 cbfa2t2 other downstream 1424322 78029244 ~ 78029753 (-)
LOC110529034 LOC106583646 other downstream 2071139 77380754 ~ 77390369 (-)
G649684 LOC100136508 other downstream 2437474 77009249 ~ 77016601 (-)
G653015 NA other upstream 486098 79943201 ~ 79943728 (-)
G653274 NA other upstream 888699 80345802 ~ 80347567 (-)
LOC110528585 LOC106583707 other upstream 1193487 80650590 ~ 80723518 (-)
G653977 NA other upstream 1321657 80778760 ~ 80780691 (-)

Expression


Co-expression Network