XLOC_025611 (gfer)


Basic Information

Item Value
gene id XLOC_025611
gene name gfer
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40162399 ~ 40168482 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050449
CTCAATGATTCAGAGCAGTAAAAGGCCCGTGGCACATTTAGTGCAGGATCTCTCACCTTTATTCTTCTGTGTTCTGGAgatttctctctctatctccgCGATCTTCTCCAGAATCCCCATTGTTGGTGAAGTGTGGTGTTTATATCCTAATATGAAGCCTGTGGAAGATACAGAGGCTCGTCAGTCATACTGTACAGACCATCCGCTCTCGGACTGCGTTGTCAGTAGAGAGCAGGCCGGTGGAGGAGCTGAAGCCTGTTGAATGTCCGCTGGACCGCGAGGAGCTGGGTAGGAGCTCGTGGTCTTTTCTTCACACTATGGCTGCGTATTATCCAGATGCACCGAGCACAGAACAGCAGCTCGAGATGACGCAGTTCATCAACCTTTTCTCTAAGGTTTTCCCATGTGATGAATGCGCAGAAGACCTGAGAACAAGATTGAAAACTAATAGACCAGATGCAGGCAGCCGGCACAAGCTGTCACAGTGGCTGTGTCGCCTCCATAATGACATCAACATCCGGTTGGGCAAGCCGGAGTTCGACTGCAGCAGGGTGGATGAGCGATGGAGAGACGGCTGGAAGGACGGATCTTGTGACTGAAACCTCCGACACTGTCATGAACACGAGTGAAATGCTTTCACATGCTGATTCTGTGGACCTGGTATTTCTGATGCAGTGAGTGCAGGCTGAATTGCCAATCAGGAATCAGACATATGTTGACATCGCACTTTATACTTGTTCTAATTGATGTAATGATTTAGCAGTATAGAAATGTCTATGTTGTGCTTTTAATCAAGAGTACGGTATGGTGTGAACACCTTGTTTT
>TCONS_00050450
CTCCTACATAACAACATGGCAGCTGCACACGGGTCGTCTCCACATAGCAGCGCGGGTATGGAGGGTTTCCCGTTCCCCGTGGCTGGCAAACCACCCGAGGACAGTACGAGTAATGACCAGACCACTACCGGAGAGACGAAAAAGAAACCTTGCCGAGCTTGTACGGATTTTAAGTCATGGATGAAGTTACAGAAACAGGCGTCCTCAGCCTCGGTGCAGGAGAGCAGGCCGGTGGAGGAGCTGAAGCCTGTTGAATGTCCGCTGGACCGCGAGGAGCTGGGTAGGAGCTCGTGGTCTTTTCTTCACACTATGGCTGCGTATTATCCAGATGCACCGAGCACAGAACAGCAGCTCGAGATGACGCAGTTCATCAACCTTTTCTCTAAGGTTTTCCCATGTGATGAATGCGCAGAAGACCTGAGAACAAGATTGAAAACTAATAGACCAGATGCAGGCAGCCGGCACAAGCTGTCACAGTGGCTGTGTCGCCTCCATAATGACATCAACATCCGGTTGGGCAAGCCGGAGTTCGACTGCAGCAGGGTGGATGAGCGATGGAGAGACGGCTGGAAGGACGGATCTTGTGACTGAAACCTCCGACACTGTCATGAACACGAGTGAAATGCTTTCACATGCTGATTCTGTGGACCTGGTATTTCTGATGCAGTGAGTGCAGGCTGAATTGCCAATCAGGAATCAGACATATGTTGACATCGCACTTTATACTTGTTCTAATTGATGTAATGATTTAGCAGTATAGAAATGTCTATGTTGTGCTTTTAATCAAGAGTACGGTATGGTGTGAACACCTTGTTTTTGGATTGTGGAGCTCTCAAGTGGAAGTAAATAGCCCAGACTGTATAAACTTTGATATCTGTCCCACAGAAGGAAATAAAGATGGTCTATTTATTTAAAGCA
>TCONS_00050451
ATAACAACATGGCAGCTGCACACGGGTCGTCTCCACATAGCAGCGCGGGTATGGAGGGTTTCCCGTTCCCCGTGGCTGGCAAACCACCCGAGGACAGTACGAGTAATGACCAGACCACTACCGGAGAGACGAAAAAGAAACCTTGCCGAGCTTGTACGGATTTTAAGTCATGGATGAAGTTACAGAAACAGGCGTCCTCAGCCTCGGTGCAGGAGAGCAGGCCGGTGGAGGAGCTGAAGCCTGTTGAATGTCCGCTGGACCGCGAGGAGCTGGGTAGGAGCTCGTGGTCTTTTCTTCACACTATGGCTGCGTATTATCCAGATGCACCGAGCACAGAACAGCAGCTCGAGATGACGCAGTTCATCAACCTTTTCTCTAAGGTTTTCCCATGTGATGAATGCGCAGAAGACCTGAGAACAAGGTCTTCATCTTTAATTGCTGTGGTTTTCATGTTTGTCCATTGCTGTTTTCAGCAGCACATGATTCAGTCAGtttgtttacatggacaacaatTCTGATATTAAATGTAGCTCTCTGATTAACGAtctctaccatgtaaacagatttttattaacattaatacagAAAGTTATACTCAAAGTAAACACAAGTGTAATTCACTCATCTGGAGTAGTGCTATTTTACTCATATTATCAAAGTGTGGTATATAGACATGTACGCATATATCACtttattactgtcatgtaggatttttgGTTACAGCACAGTGATACAGCAGTAATCAAAAGTTTGACGACATGGCTGAGAGGGCAGAATTTGTTTCTACTAAGGTCTGTTTAcatcaggcgtgtccaaactcggtcctggagggccggtgtc

Function

symbol description
gfer Enables flavin-linked sulfhydryl oxidase activity and identical protein binding activity. Acts upstream of or within heart development and liver development. Located in mitochondrion. Is expressed in several structures, including fin; gill; head; liver and biliary system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in kidney failure and renal fibrosis. Orthologous to human GFER (growth factor, augmenter of liver regeneration).

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001889 liver development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function
GO:0016971 flavin-linked sulfhydryl oxidase activity molecular_function
GO:0016972 thiol oxidase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060810-186 Enables flavin-linked sulfhydryl oxidase activity and identical protein binding activity. Acts upstream of or within heart development and liver development. Located in mitochondrion. Is expressed in several structures, including fin; gill; head; liver and biliary system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in kidney failure and renal fibrosis. Orthologous to human GFER (growth factor, augmenter of liver regeneration).

Ensembl:

ensembl_id ENSDARG00000070061

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050449 False 825 processed_transcript 0.48 3 40162399 40168381
TCONS_00050450 False 918 mRNA 0.48 3 40164129 40168482
TCONS_00050451 True 840 lncRNA 0.45 2 40164136 40166202

Neighbor

gene id symbol gene type direction distance location
XLOC_025610 ccdc97 coding upstream 194987 39958407 ~ 39967412 (+)
XLOC_025608 cacna1ha coding upstream 209958 39759130 ~ 39952441 (+)
XLOC_025609 BX649356.1 coding upstream 277443 39884819 ~ 39884956 (+)
XLOC_025607 epn2 coding upstream 472181 39656188 ~ 39690218 (+)
XLOC_025606 NA coding upstream 530185 39626833 ~ 39632214 (+)
XLOC_025612 syngr3a coding downstream 1734 40170216 ~ 40180201 (+)
XLOC_025613 smcr8a coding downstream 86926 40255408 ~ 40258950 (+)
XLOC_025614 bud31 coding downstream 116116 40284598 ~ 40287841 (+)
XLOC_025615 cpsf4 coding downstream 120936 40289418 ~ 40295255 (+)
XLOC_025616 AL928657.2 coding downstream 125024 40293506 ~ 40306031 (+)
XLOC_025429 BX649540.1 misc upstream 9913363 30248739 ~ 30249036 (+)
XLOC_025605 NA non-coding upstream 538474 39618568 ~ 39623925 (+)
XLOC_025601 BX537342.1 non-coding upstream 597900 39555762 ~ 39564499 (+)
XLOC_025599 NA non-coding upstream 897882 39258810 ~ 39264517 (+)
XLOC_025618 NA non-coding downstream 183191 40351673 ~ 40352408 (+)
XLOC_025619 NA non-coding downstream 235687 40404169 ~ 40404939 (+)
XLOC_025623 BX649559.1 non-coding downstream 623238 40791720 ~ 40794879 (+)
XLOC_025627 NA non-coding downstream 730142 40898624 ~ 40902157 (+)
XLOC_025628 NA non-coding downstream 776558 40945040 ~ 40948999 (+)

Expression


Co-expression Network