XLOC_025613 (smcr8a)


Basic Information

Item Value
gene id XLOC_025613
gene name smcr8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40255408 ~ 40258950 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050453
ATGATTGGCTCACCAGATGTGGTGGCTTTTACCAAAGAAGATGACTTTGGGGACTCATTCTCAGATCCGTTGTCACTTCCAGATGAGTTTTCGGTGCCTTTGTTTACTCATGCTGCCAATGCAAATCCATGGACGAAGACATCCTATGCGAAATTCTCGAAAGATTTCATTCTCATCTCTGAATTCTCAGAGCAGGTGGGTCCACAGCCTTTACTCACCATTCCCAGTGACCCCAAGGTGTGTGGGACGTTTGACCTTAACTATTTCTCGCTTCGCATCATGTCTGTGGACTACCAGGCGTCTTTTGTCGGTCATCCTCCTGGGAGTAACTACCCAAAGCTTAATTTTGTGGAGGACTCAAAAGTGGTTCTGGGTGACTCCAAGGAAGGTGCATTCGCCTACGTCCATCACCTGACGCTGTATGATTTGGAGGCTCGAGGATTTGTACGGCCCTTCTGTATGGCCTACATTTCTGCAGACGAGAGGAAGATCATGCAGCAGTTCCAGGAGCTGTCATCGGAGTTTTCCAAGGCCTCAGAATGTCTGAAATCAGGAAATAGGAAAGCTTTCGCAAACGAGCTGGAAAAGAAACTAAAAGACCTGGAGTACACCAGATCAGTGTTGCACAAAGAGACGGAGCTGCAGAAAATGAACAATGGCTGTTACTCCACACAAGCCATCGAGAAGGCGAATGAATTAGCAAATGTGGAGAAGTCCATCTATGAGCACAAAGATCTGCTGAGACAAATCACATCCTATCCTTCCAGGAGAaagagagatgtggattttgtacAGTGTGAGGCAGAGAAACCTCCTGTAATGGACGAGACGCTAAAGGACACTAATCCTTCTGACAGTGCAGAAAACACAGTAGAAACAGAAAGTAGAAAGTCTTCTTACACACCGCAGCTCATCAAGGCCAAATCTGCAAAGTGTTTTGATAAACGCTTGAAAACGCTGGAGGAGCTCTGCGACACTAGCTTTTTCCTCCAAACTCTAGAGCAGCTAAACGCAGTGGAGAAGTCCTTCCGAGGAGATCTGTGCTTCATTTACACCAGCCAGATCGACAGGGCTCTTGTGAGCAAACAAAGAGTTACTAGTTTTCTCTTCGAAGCCGAACACGACTGGGAGGACGGAGGAGCCTCAAAGAACTTCAGTATTCCTTCCAACAACCCAACAATCCCCATCCTGAACTTTTCCGGCGAGCCGCTGAGTCTGGACTCCTACACAACCTGCATAGACGTAGACCACCTTAAGCCAGGTGTGGAGTCTGGGGAAGGTCCACCTGAGTCCAGCACATCAGACATCACACAGGAAACCTCTGAAGCCGCTGACACTGAGACCAAAGGCAGTTTTAGTAGCGACAAGAGTATAGAGGCTCTAGGAAGTGTTAGTCCTTCCAGTCTACAAACAAATTTCTTTGATGGCCTTGAAAGGAGAAGCAAGATATCCATTCCGTCCTATTCTGACAATGCATCTAGCTCTATTGCTGTCCCACATAGGAGATCTGATGGGAATCTAGTCCAGATGGATGCAGCTTGCTGTATTGGACAGGATGGTTTTATTTTTGAGGATCCTTTACCTGAGCTTGCTCAGGAGTGTTGCGGCGACACCGTGGTCAACCAAGAGCCTCTGTCTCTTCTTCATGGAGATCCTGCCTTACAGATGGACTACATTTTGGAAGAGAGCCCCAACATGGGATTGACTTTTTCTGAACTCAACACTAGCGTTCTCTCTGAGGAGGTGGCAAAAATTAACATCGAGGATGTATTTGATCGCACCAGCTTCATGAGCATCTCTACCAGCTCCGACCGAGCCGTGTCTCCTTTCACCTACGGCAGTGCGTTGACCGTAAAGCAGAAGAAGAAAGCTGGTCACAGCGCCCTTCGCTTCATCAGGCAATACCCCTTTGCTCAGCAAGCCATTTCCTGCCTTCTGAGTGGCCGAACACTTGTTATTCTGGGAGTTGATGAGGGTACAGTGAGGAAGCTGGTGAACGCTTTATTCATTTTTGTGCCAAATCTGGGAAAGTATGGTGAAACGGTCCAGCCATGGCTCTCAACGCCATTTCAGCTTACAGACCTGCAGAGATGGAAACTTATTGGATTGCAGAGagCTGTCTCTCCGGCTGGATCCAGCATCCTCCACTCTTTGAATCGATACAGCCGTTACATAAGCATTTTGGACTGTGACAACAAAACCCTCCGGTGTCCGCCATACAAGGGAACACTAATAAGCCACTTGGCAGACCACAGGACTCAGATCAAACGTGGCAGCACCTACTTCCTCCACATTCAGGGTATGTTGACTCAGCTTACAGCCAAGGCCTTCCTTTATACATTCTGCCATCACATTCACCTTCCCATGGACATCAACGACCAGGGCTCGGTAACATCGCGCAGGACTAATTTCTTGTTGCAGCTCGGCTACACTGTGGAGGAAAGTAAAATCATCCAGTACCTGAGTGAGCTCATCAAGCAGCATTACATTCACGGGTCCGCCAAAGTGGGCAACCcgtctttttcttttaattacaCCACCAGCTATTTGTATAAGATCTGAATGTGTCCGCTGTATGTTCGACATTACGTTTCCCAatcctgtt

Function

symbol description
smcr8a Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm and nucleus. Predicted to be part of guanyl-nucleotide exchange factor complex. Orthologous to human SMCR8 (SMCR8-C9orf72 complex subunit).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0032045 guanyl-nucleotide exchange factor complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071212-4 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm and nucleus. Predicted to be part of guanyl-nucleotide exchange factor complex. Orthologous to human SMCR8 (SMCR8-C9orf72 complex subunit).

Ensembl:

ensembl_id ENSDARG00000052818

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050453 True 2605 mRNA 0.48 2 40255408 40258950

Neighbor

gene id symbol gene type direction distance location
XLOC_025612 syngr3a coding upstream 75207 40170216 ~ 40180201 (+)
XLOC_025611 gfer coding upstream 86926 40162399 ~ 40168482 (+)
XLOC_025610 ccdc97 coding upstream 287996 39958407 ~ 39967412 (+)
XLOC_025608 cacna1ha coding upstream 302967 39759130 ~ 39952441 (+)
XLOC_025609 BX649356.1 coding upstream 370452 39884819 ~ 39884956 (+)
XLOC_025614 bud31 coding downstream 25648 40284598 ~ 40287841 (+)
XLOC_025615 cpsf4 coding downstream 30468 40289418 ~ 40295255 (+)
XLOC_025616 AL928657.2 coding downstream 34556 40293506 ~ 40306031 (+)
XLOC_025617 slc29a4 coding downstream 56460 40315410 ~ 40349733 (+)
XLOC_025618 NA coding downstream 92723 40351673 ~ 40352408 (+)
XLOC_025429 BX649540.1 misc upstream 10006372 30248739 ~ 30249036 (+)
XLOC_025606 NA non-coding upstream 623194 39626833 ~ 39632214 (+)
XLOC_025605 NA non-coding upstream 631483 39618568 ~ 39623925 (+)
XLOC_025601 BX537342.1 non-coding upstream 690909 39555762 ~ 39564499 (+)
XLOC_025599 NA non-coding upstream 990891 39258810 ~ 39264517 (+)
XLOC_025619 NA non-coding downstream 145219 40404169 ~ 40404939 (+)
XLOC_025623 BX649559.1 non-coding downstream 532770 40791720 ~ 40794879 (+)
XLOC_025627 NA non-coding downstream 639674 40898624 ~ 40902157 (+)
XLOC_025628 NA non-coding downstream 686090 40945040 ~ 40948999 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03967726_03970443 NA coding CI01000046 null 3967457 ~ 3970713 (-)
bowfin (Amia calva) AMCG00018514 NA coding CM030135.1 CM030135.1 13187923 ~ 13196197 (+)