G652845


Basic Information

Item Value
gene id G652845
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 79990609 ~ 79992859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU741879
GGGTCTTTATTCATTTAAATTATTAAGATGCTACATAGTCCATCAAGGTTTAACACCATAGACTGACTACTTGACTAGGAATAGGAATTTTTCTTAGATTTATTTATATACATACAAAACAGTTGCCGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACAGGTCAATTTTAGTGTTTTCACAACCATTGGGACAGAGTAGTTCAGCTCAGACCTGTtctgccctctgccctccccCAGTCATGcttcacacacacatagatacaggAGGTTACGCTCAGTCACACGTAGATACAGGAGGTTACTCTCAGTCACACGTAGATACAGGAGGTTACTCTCAGTCACACGTAGATACAGTAGGttactctctccctcgctctttcctCAAATCCATACTTCCATCTGCAAGTTATTTTTTGTTATCCATAATCTGCGACAGTGAGATGAAAGAAATTGAGTGTATTGCATTTTTGACATGAATCCCATTAAGGACAAAGCAATCAAAAACAGTAGGGACAAACACAAAAGGCAGAATGGTCCCTTCAGTATATAGTTTAGTATGTTTTAGTTTTCTTGTGAGTTAAATGCAGAGACACGTCAACTAACAAAACAGTTACATTAATAGATACtgggaaaaaaaaacattcttgaGAATATAGTGCATTAAAATGAACATGAGTGCAGTGATAACTATAACggtgaaacaaacagacaaagatCCAAAACTATCGATGCTGACCGTAGTGGGGTGAATGAAGCCAATGACCATACAGTTGGAGAAATGTTCTTTAAGAGTTACGTGGACAGTCACAGCATGGTGAACGGACTGCATAAACCATTTAAATGACAGTTCTGCCTGACAGATCAACAAATGTACAGCTTGGAGAAGAAAAAAGAAAACCGACAAAACCTCAACAAAACTCACTTCTACAAGTACCtttcctcattccctctctcccttctttccttcTAGAATAACGTGCTAATAACAGTCACAAAGTAAGTAGGCTATTCAGTGACTCAGTCCCAACCCATCCGGAGTTCATTtagctgcatacattttttaataatacCTCAAAccctaaaaaacaaaaaaactttaGCACAAAAacgaaaaaaatgaaaaaaaatgaaaagggggaaaaaaaaatctgaagGTTGAAGTTGAGAAAATCTAAGGCTGAAAAGAAACATCACAATGATGAAAGCAATTCAATTAAATGTAAAATGTCCCATAAAATGCAATGCTCTTTAGTGGACGCATGCAATCAAGAATATACTGCCAACTTAGGTATTTATGATCAAAAGGGGGGAAATGTTCTAGCTTGGAAAAACAGAGAATGGGGAGACGGAGGAGGGGGTTGTTGTGTCGATTAAGGATGTTCCCCAATCACAGAGGAGACGGTCTATACAAAGCCTCTGATTGGAAGAGTCAGTTTGGTTGACAGTAGCCCTGTGCATAATCCCATCTACTTCCTGAAGCCTCCCTGTCAATCATGTTGTAAACGAGGTGAGACAAAAAGAGTGCTGCCCACCTGGTTTTACTTTAATCCAGGGTTACTATGGATTCACTACACAGAGTATGCCTACGGCCTGTGGCCACTTGTGAAGATAAATGACAATCCGTGAAAACATTCATTCACACAACGCAAACTGACTCAATCGCAAGCCCCCCCCCCGGTGTTTAGAAAATCCTTTACGTCAATGACTATCAATGATCTGCATTTGACTCCCTCCTACTGTATCTGTGGCGTAGGCCAGAATGATTATGTTATGATTAAAGAGATCCTGTaacaagttgttgttttttctctcGTTGGTTTGTTCACAACATGGAATTTTGATTTGtatctttttttatttgtacATAAATGAACGATTCAAAACTACCCCATTGATATGGCATTTCTGAATTAAAAAAAATCCCAAATCCGTTTGTTTCAATCCCCCGAAAGCATGCGGTTGGCCGTCTCTCGCTCGCCGCTTGCTCTTACAAGACCAACTTGCCGATGATGACTCCGACCACGAAGAAGAGCACGATGAGGGCTACTGTGCGCAGGCTcagcccctcctccttcaccatgGAGTGGGAGGAGTGCTGGGAGGAGGACAACACATTGCTCTTCCTCATCCGCAGGCCATCG
>TU741881
GGGTCTTTATTCATTTAAATTATTAAGATGCTACATAGTCCATCAAGGTTTAACACCATAGACTGACTACTTGACTAGGAATAGGAATTTTTCTTAGATTTATTTATATACATACAAAACAGTTGCCGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACAGGTCAATTTTAGTGTTTTCACAACCATTGGGACAGAGTAGTTCAGCTCAGACCTGTtctgccctctgccctccccCAGTCATGcttcacacacacatagatacaggAGGTTACGCTCAGTCACACGTAGATACAGGAGGTTACTCTCAGTCACACGTAGATACAGGAGGTTACTCTCAGTCACACGTAGATACAGTAGGttactctctccctcgctctttcctCAAATCCATACTTCCATCTGCAAGTTATTTTTTGTTATCCATAATCTGCGACAGTGAGATGAAAGAAATTGAGTGTATTGCATTTTTGACATGAATCCCATTAAGGACAAAGCAATCAAAAACAGTAGGGACAAACACAAAAGGCAGAATGGTCCCTTCAGTATATAGTTTAGTATGTTTTAGTTTTCTTGTGAGTTAAATGCAGAGACACGTCAACTAACAAAACAGTTACATTAATAGATACtgggaaaaaaaaacattcttgaGAATATAGTGCATTAAAATGAACATGAGTGCAGTGATAACTATAACggtgaaacaaacagacaaagatCCAAAACTATCGATGCTGACCGTAGTGGGGTGAATGAAGCCAATGACCATACAGTTGGAGAAATGTTCTTTAAGAGTTACGTGGACAGTCACAGCATGGTGAACGGACTGCATAAACCATTTAAATGACAGTTCTGCCTGACAGATCAACAAATGTACAGCTTGGAGAAGAAAAAAGAAAACCGACAAAACCTCAACAAAACTCACTTCTACAAGTACCtttcctcattccctctctcccttctttccttcTAGAATAACGTGCTAATAACAGTCACAAAGTAAGTAGGCTATTCAGTGACTCAGTCCCAACCCATCCGGAGTTCATTtagctgcatacattttttaataatacCTCAAAccctaaaaaacaaaaaaactttaGCACAAAAacgaaaaaaatgaaaaaaaatgaaaagggggaaaaaaaaatctgaagGTTGAAGTTGAGAAAATCTAAGGCTGAAAAGAAACATCACAATGATGAAAGCAATTCAATTAAATGTAAAATGTCCCATAAAATGCAATGCTCTTTAGTGGACGCATGCAATCAAGAATATACTGCCAACTTAGGTATTTATGATCAAAAGGGGGGAAATGTTCTAGCTTGGAAAAACAGAGAATGGGGAGACGGAGGAGGGGGTTGTTGTGTCGATTAAGGATGTTCCCCAATCACAGAGGAGACGGTCTATACAAAGCCTCTGATTGGAAGAGTCAGTTTGGTTGACAGTAGCCCTGTGCATAATCCCATCTACTTCCTGAAGCCTCCCTGTCAATCATGTTGTAAACGAGGTGAGACAAAAAGAGTGCTGCCCACCTGGTTTTACTTTAATCCAGGGTTACTATGGATTCACTACACAGAGTATGCCTACGGCCTGTGGCCACTTGTGAAGATAAATGACAATCCGTGAAAACATTCATTCACACAACGCAAACTGACTCAATCGCAAGCCCCCCCCCCGGTGTTTAGAAAATCCTTTACGTCAATGACTATCAATGATCTGCATTTGACTCCCTCCTACTGTATCTGTGGCGTAGGCCAGAATGATTATGTTATGATTAAAGAGATCCTGTaacaagttgttgttttttctctcGTTGGTTTGTTCACAACATGGAATTTTGATTTGtatctttttttatttgtacATAAATGAACGATTCAAAACTACCCCATTGATATGGCATTTCTGAATTAAAAAAAATCCCAAATCCGTTTGTTTCAATCCCCCGAAAGCATGCGGTTGGCCGTCTCTCGCTCGCCGCTTGCTCTTACAAGACCAACTTGCCGATGATGACTCCGACCACGAAGAAGAGCACGATGAGGGCTACTGTGCGCAGGCTcagcccctcctccttcaccatgGAGTGGGAGGAGTGCTGGGAGGAGGACAACACATTGCTCTTCCTCATCCGCAGGCCATCG
>TU741882
GGGTCTTTATTCATTTAAATTATTAAGATGCTACATAGTCCATCAAGGTTTAACACCATAGACTGACTACTTGACTAGGAATAGGAATTTTTCTTAGATTTATTTATATACATACAAAACAGTTGCCGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACAGGTCAATTTTAGTGTTTTCACAACCATTGGGACAGAGTAGTTCAGCTCAGACCTGTtctgccctctgccctccccCAGTCATGcttcacacacacatagatacaggAGGTTACGCTCAGTCACACGTAGATACAGGAGGTTACTCTCAGTCACACGTAGATACAGTAGGttactctctccctcgctctttcctCAAATCCATACTTCCATCTGCAAGTTATTTTTTGTTATCCATAATCTGCGACAGTGAGATGAAAGAAATTGAGTGTATTGCATTTTTGACATGAATCCCATTAAGGACAAAGCAATCAAAAACAGTAGGGACAAACACAAAAGGCAGAATGGTCCCTTCAGTATATAGTTTAGTATGTTTTAGTTTTCTTGTGAGTTAAATGCAGAGACACGTCAACTAACAAAACAGTTACATTAATAGATACtgggaaaaaaaaacattcttgaGAATATAGTGCATTAAAATGAACATGAGTGCAGTGATAACTATAACggtgaaacaaacagacaaagatCCAAAACTATCGATGCTGACCGTAGTGGGGTGAATGAAGCCAATGACCATACAGTTGGAGAAATGTTCTTTAAGAGTTACGTGGACAGTCACAGCATGGTGAACGGACTGCATAAACCATTTAAATGACAGTTCTGCCTGACAGATCAACAAATGTACAGCTTGGAGAAGAAAAAAGAAAACCGACAAAACCTCAACAAAACTCACTTCTACAAGTACCtttcctcattccctctctcccttctttccttcTAGAATAACGTGCTAATAACAGTCACAAAGTAAGTAGGCTATTCAGTGACTCAGTCCCAACCCATCCGGAGTTCATTtagctgcatacattttttaataatacCTCAAAccctaaaaaacaaaaaaactttaGCACAAAAacgaaaaaaatgaaaaaaaatgaaaagggggaaaaaaaaatctgaagGTTGAAGTTGAGAAAATCTAAGGCTGAAAAGAAACATCACAATGATGAAAGCAATTCAATTAAATGTAAAATGTCCCATAAAATGCAATGCTCTTTAGTGGACGCATGCAATCAAGAATATACTGCCAACTTAGGTATTTATGATCAAAAGGGGGGAAATGTTCTAGCTTGGAAAAACAGAGAATGGGGAGACGGAGGAGGGGGTTGTTGTGTCGATTAAGGATGTTCCCCAATCACAGAGGAGACGGTCTATACAAAGCCTCTGATTGGAAGAGTCAGTTTGGTTGACAGTAGCCCTGTGCATAATCCCATCTACTTCCTGAAGCCTCCCTGTCAATCATGTTGTAAACGAGGTGAGACAAAAAGAGTGCTGCCCACCTGGTTTTACTTTAATCCAGGGTTACTATGGATTCACTACACAGAGTATGCCTACGGCCTGTGGCCACTTGTGAAGATAAATGACAATCCGTGAAAACATTCATTCACACAACGCAAACTGACTCAATCGCAAGCCCCCCCCCCGGTGTTTAGAAAATCCTTTACGTCAATGACTATCAATGATCTGCATTTGACTCCCTCCTACTGTATCTGTGGCGTAGGCCAGAATGATTATGTTATGATTAAAGAGATCCTGTaacaagttgttgttttttctctcGTTGGTTTGTTCACAACATGGAATTTTGATTTGtatctttttttatttgtacATAAATGAACGATTCAAAACTACCCCATTGATATGGCATTTCTGAATTAAAAAAAATCCCAAATCCGTTTGTTTCAATCCCCCGAAAGCATGCGGTTGGCCGTCTCTCGCTCGCCGCTTGCTCTTACAAGACCAACTTGCCGATGATGACTCCGACCACGAAGAAGAGCACGATGAGGGCTACTGTGCGCAGGCTcagcccctcctccttcaccatgGAGTGGGAGGAGTGCTGGGAGGAGGACAACACATTGCTCTTCCTCATCCGCAGGCCATCG
>TU741884
GGGTCTTTATTCATTTAAATTATTAAGATGCTACATAGTCCATCAAGGTTTAACACCATAGACTGACTACTTGACTAGGAATAGGAATTTTTCTTAGATTTATTTATATACATACAAAACAGTTGCCGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACTGCTTACATGGAGCACGATGGTAGACAGGTCAATTTTAGTGTTTTCACAACCATTGGGACAGAGTAGTTCAGCTCAGACCTGTtctgccctctgccctccccCAGTCATGcttcacacacacatagatacaggAGGTTACGCTCAGTCACACGTAGATACAGGAGGTTATGCTCAGTCACACGTAGATACAATAGGTTACTCTCAGTCACACGTAGATACAGTAGGttactctctccctcgctctttcctCAAATCCATACTTCCATCTGCAAGTTATTTTTTGTTATCCATAATCTGCGACAGTGAGATGAAAGAAATTGAGTGTATTGCATTTTTGACATGAATCCCATTAAGGACAAAGCAATCAAAAACAGTAGGGACAAACACAAAAGGCAGAATGGTCCCTTCAGTATATAGTTTAGTATGTTTTAGTTTTCTTGTGAGTTAAATGCAGAGACACGTCAACTAACAAAACAGTTACATTAATAGATACtgggaaaaaaaaacattcttgaGAATATAGTGCATTAAAATGAACATGAGTGCAGTGATAACTATAACggtgaaacaaacagacaaagatCCAAAACTATCGATGCTGACCGTAGTGGGGTGAATGAAGCCAATGACCATACAGTTGGAGAAATGTTCTTTAAGAGTTACGTGGACAGTCACAGCATGGTGAACGGACTGCATAAACCATTTAAATGACAGTTCTGCCTGACAGATCAACAAATGTACAGCTTGGAGAAGAAAAAAGAAAACCGACAAAACCTCAACAAAACTCACTTCTACAAGTACCtttcctcattccctctctcccttctttccttcTAGAATAACGTGCTAATAACAGTCACAAAGTAAGTAGGCTATTCAGTGACTCAGTCCCAACCCATCCGGAGTTCATTtagctgcatacattttttaataatacCTCAAAccctaaaaaacaaaaaaactttaGCACAAAAacgaaaaaaatgaaaaaaaatgaaaagggggaaaaaaaaatctgaagGTTGAAGTTGAGAAAATCTAAGGCTGAAAAGAAACATCACAATGATGAAAGCAATTCAATTAAATGTAAAATGTCCCATAAAATGCAATGCTCTTTAGTGGACGCATGCAATCAAGAATATACTGCCAACTTAGGTATTTATGATCAAAAGGGGGGAAATGTTCTAGCTTGGAAAAACAGAGAATGGGGAGACGGAGGAGGGGGTTGTTGTGTCGATTAAGGATGTTCCCCAATCACAGAGGAGACGGTCTATACAAAGCCTCTGATTGGAAGAGTCAGTTTGGTTGACAGTAGCCCTGTGCATAATCCCATCTACTTCCTGAAGCCTCCCTGTCAATCATGTTGTAAACGAGGTGAGACAAAAAGAGTGCTGCCCACCTGGTTTTACTTTAATCCAGGGTTACTATGGATTCACTACACAGAGTATGCCTACGGCCTGTGGCCACTTGTGAAGATAAATGACAATCCGTGAAAACATTCATTCACACAACGCAAACTGACTCAATCGCAAGCCCCCCCCCCGGTGTTTAGAAAATCCTTTACGTCAATGACTATCAATGATCTGCATTTGACTCCCTCCTACTGTATCTGTGGCGTAGGCCAGAATGATTATGTTATGATTAAAGAGATCCTGTaacaagttgttgttttttctctcGTTGGTTTGTTCACAACATGGAATTTTGATTTGtatctttttttatttgtacATAAATGAACGATTCAAAACTACCCCATTGATATGGCATTTCTGAATTAAAAAAAATCCCAAATCCGTTTGTTTCAATCCCCCGAAAGCATGCGGTTGGCCGTCTCTCGCTCGCCGCTTGCTCTTACAAGACCAACTTGCCGATGATGACTCCGACCACGAAGAAGAGCACGATGAGGGCTACTGTGCGCAGGCTcagcccctcctccttcaccatgGAGTGGGAGGAGTGCTGGGAGGAGGACAACACATTGCTCTTCCTCATCCGCAGGCCATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU741879 False 2191 TUCP 0.41 3 79990609 79992859
TU741881 False 2165 TUCP 0.41 4 79990609 79992859
TU741882 False 2161 lncRNA 0.41 2 79990609 79992859
TU741884 True 2191 TUCP 0.41 2 79990609 79992859

Neighbor

gene id symbol gene type direction distance location
apcdd1l LOC106583687 coding upstream 9960 79952333 ~ 79980649 (+)
LOC110529042 LOC106583686 coding upstream 117117 79840410 ~ 79876508 (+)
LOC110528566 LOC106583670 coding upstream 169006 79786470 ~ 79821603 (+)
nat8l2 LOC106583684 coding upstream 260745 79727172 ~ 79729864 (+)
ncoa5 NA coding upstream 533505 79444472 ~ 79457104 (+)
LOC110528569 LOC106583689 coding downstream 54972 80047831 ~ 80074951 (+)
LOC110528572 ankrd60 coding downstream 88127 80080986 ~ 80085550 (+)
LOC110528573 LOC106583691 coding downstream 93711 80086570 ~ 80097955 (+)
LOC118965367 NA coding downstream 229340 80222199 ~ 80224478 (+)
LOC110529044 LOC106583700 coding downstream 261107 80253966 ~ 80255219 (+)
G652844 NA non-coding upstream 2461 79987937 ~ 79988148 (+)
G652843 NA non-coding upstream 2904 79987490 ~ 79987705 (+)
G652840 NA non-coding upstream 6273 79983885 ~ 79984336 (+)
G652816 NA non-coding upstream 47772 79942594 ~ 79942837 (+)
G652790 NA non-coding upstream 78272 79910530 ~ 79912337 (+)
G652822 NA non-coding downstream 33572 80026431 ~ 80044179 (+)
G652898 LOC106598550 non-coding downstream 120962 80113821 ~ 80156478 (+)
G652902 NA non-coding downstream 125832 80118691 ~ 80158540 (+)
G653159 NA non-coding downstream 198265 80191124 ~ 80191563 (+)
G653167 NA non-coding downstream 204530 80197389 ~ 80198059 (+)
G651075 NA other upstream 1574602 78359416 ~ 78416007 (+)
G650827 NA other upstream 1881207 78107406 ~ 78109402 (+)
G650261 NA other upstream 2157548 77831000 ~ 77833061 (+)
G650282 NA other upstream 2333357 77653938 ~ 77657252 (+)
G650094 NA other upstream 2516360 77473212 ~ 77474249 (+)
LOC110528584 bloc1s1 other downstream 744017 80736845 ~ 80747734 (+)
G653803 NA other downstream 1139321 81132180 ~ 81133770 (+)
G654244 NA other downstream 1216297 81209156 ~ 81209544 (+)
G654265 LOC106611445 other downstream 1333464 81326323 ~ 81352422 (+)
G654603 NA other downstream 1582083 81574942 ~ 81575423 (+)

Expression

G652845 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

G652845 Expression in each Bioproject

Bar chart with 19 bars.
G652845 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G27581 NA non-coding CM030123.1 CM030123.1 38671871 ~ 38729032 (+)