Fish Transcriptome and Expression Database

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model fish

XLOC_025616 (AL928657.2)

Basic Information

Item	Value
gene id	XLOC_025616
gene name	AL928657.2
gene type	coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	40293506 ~ 40306031 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050456
aggttttataaaaaatatataaaatttaaaacctCTGGAattaatggTATATGTCTGTTTATAGTTGGGGAAATCTCTCTTAAttataattggtCTTTATGTCATATATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116912

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050456	True	111	mRNA	0.23	5	40293506	40306031

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025614	bud31	coding	upstream	5665	40284598 ~ 40287841 (+)
XLOC_025613	smcr8a	coding	upstream	34556	40255408 ~ 40258950 (+)
XLOC_025612	syngr3a	coding	upstream	113305	40170216 ~ 40180201 (+)
XLOC_025611	gfer	coding	upstream	125024	40162399 ~ 40168482 (+)
XLOC_025610	ccdc97	coding	upstream	326094	39958407 ~ 39967412 (+)
XLOC_025617	slc29a4	coding	downstream	9379	40315410 ~ 40349733 (+)
XLOC_025618	NA	coding	downstream	45642	40351673 ~ 40352408 (+)
XLOC_025619	NA	coding	downstream	98138	40404169 ~ 40404939 (+)
XLOC_025620	tnrc18	coding	downstream	101321	40407352 ~ 40488846 (+)
XLOC_025621	fscn1a	coding	downstream	270416	40576447 ~ 40589489 (+)
XLOC_025429	BX649540.1	misc	upstream	10044470	30248739 ~ 30249036 (+)
XLOC_025609	BX649356.1	non-coding	upstream	408550	39884819 ~ 39884956 (+)
XLOC_025606	NA	non-coding	upstream	661292	39626833 ~ 39632214 (+)
XLOC_025605	NA	non-coding	upstream	669581	39618568 ~ 39623925 (+)
XLOC_025601	BX537342.1	non-coding	upstream	729007	39555762 ~ 39564499 (+)
XLOC_025599	NA	non-coding	upstream	1028989	39258810 ~ 39264517 (+)
XLOC_025623	BX649559.1	non-coding	downstream	485689	40791720 ~ 40794879 (+)
XLOC_025627	NA	non-coding	downstream	592593	40898624 ~ 40902157 (+)
XLOC_025628	NA	non-coding	downstream	639009	40945040 ~ 40948999 (+)

Expression

Co-expression Network