G653458


Basic Information

Item Value
gene id G653458
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80548583 ~ 80549409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU742577
ttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaaattttcaacaaatcaaaaactgaaaaattgggcgtgcaaaattattcagccccattactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcatctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctctaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacgtcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaaaggggccgaatactttcgcaaggcactgtatctgctg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU742577 True 827 lncRNA 0.39 1 80548583 80549409

Neighbor

gene id symbol gene type direction distance location
LOC110529044 LOC106583700 coding upstream 293364 80253966 ~ 80255219 (+)
LOC118965367 NA coding upstream 324105 80222199 ~ 80224478 (+)
LOC110528573 LOC106583691 coding upstream 450628 80086570 ~ 80097955 (+)
LOC110528572 ankrd60 coding upstream 463033 80080986 ~ 80085550 (+)
LOC110528569 LOC106583689 coding upstream 473632 80047831 ~ 80074951 (+)
LOC110528584 bloc1s1 coding downstream 187436 80736845 ~ 80747734 (+)
LOC110529045 LOC106583706 coding downstream 202083 80751492 ~ 80760209 (+)
LOC110528580 LOC106583705 coding downstream 214261 80738696 ~ 80793513 (+)
LOC110528579 asic1 coding downstream 299724 80849133 ~ 81183921 (+)
LOC110528578 smarcd1 coding downstream 674167 81223576 ~ 81256912 (+)
G653456 NA non-coding upstream 898 80547172 ~ 80547685 (+)
G653374 NA non-coding upstream 82796 80431776 ~ 80465787 (+)
G653366 NA non-coding upstream 126381 80422000 ~ 80422202 (+)
G653264 NA non-coding upstream 143798 80404388 ~ 80404785 (+)
G653261 NA non-coding upstream 154978 80393040 ~ 80393605 (+)
G653459 NA non-coding downstream 476 80549885 ~ 80550111 (+)
G653508 NA non-coding downstream 92958 80642367 ~ 80642781 (+)
G653512 NA non-coding downstream 103099 80652508 ~ 80678236 (+)
G653513 NA non-coding downstream 109596 80659005 ~ 80761835 (+)
G653523 NA non-coding downstream 121498 80670907 ~ 80671274 (+)
G652845 NA other upstream 555724 79990609 ~ 79992859 (+)
G651075 NA other upstream 2132576 78359416 ~ 78416007 (+)
G650827 NA other upstream 2439181 78107406 ~ 78109402 (+)
G650261 NA other upstream 2715522 77831000 ~ 77833061 (+)
G650282 NA other upstream 2891331 77653938 ~ 77657252 (+)
G653803 NA other downstream 582771 81132180 ~ 81133770 (+)
G654244 NA other downstream 659747 81209156 ~ 81209544 (+)
G654265 LOC106611445 other downstream 776914 81326323 ~ 81352422 (+)
G654603 NA other downstream 1025533 81574942 ~ 81575423 (+)

Expression


Co-expression Network