G653950


Basic Information

Item Value
gene id G653950
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 80745125 ~ 80747556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU743171
TGAGATGTTACCGTCGCATTTATTACACAGGGTAGAGGTAGCTAGCCTAGCATTTATTAGCATTTATTACACAGGGTAGAGGTAGCTAGCCTAGCATTTATTACACAGGGTAGAGGTAGCTAGCCTAGCATTTATTAGCATTTATTACACAGGGTAGAGGTAGCTAGCCTTGCTAACCCAGACTGACATGAATGAGTACGGTTCTGTGCACATAGTCCAATTAACATAATAATTtgatttcaaaatgtttacatgcTTTTACAAGAAGAcgatttccccccccccaaaaaaatcctgttaacatggacacatctgaaatcaggctacctgatgggactTTGATGAATGCAGAAAAATCGGCAATCAAAATAAAAACGCTCTCACACAACAACCCTGTTATTTTTTGAGGAGCCTATTAGAGACGGAGTTCGGACCtataaagtttgtatgtgaaaactataTTTCTAAGATGCATACTTGTGTATTCAAAGGAAATGTGTGCTGCTGGTTCTGGCACATCTGCAGGTCAAACACACCGCTGGAAATCTGATTAAGTTTCTTTACATGTCGTAATCATTTGAAAGATGGCGCAGAAAACCAGATGTTTAAATCGGCATATGCTTACTTCGATTATGATCGCATGCCGATTAAGATTAAGCAGAGTAAGGAGTAAATGACTATTGCATGATCTGCCTGCTGCCACAATCCATTTAATATTGGGTTAATAGTGTGCAGGGCTCCTCAAGTCCTGCCTCTTCCATCTTACTCAGTGATGAATATTCATTCAGGAATTCTGCAACAACCAGGGTAGGTAGTTTTAGTCAGACAGGGAGAAGGCAGTAACTAGTCAGTCTCTTTCTAAAACAGGAGACTTGCTCATTTAATTACAAGCCAATAAATCCAATTTACCCACGCTACTTTTACACAAACAGGCCTCTTTTGTTCCAGTgtcgcaaaatacattttgaaatctaTATCATTCAATTATTTCACCCACACGtctgttgccaagggctaaaatagaagtcagttatatttctgatgcagatcacGCTGCAAGGCCTGTAtcttccatctcctcattggtttatagaagcaggtacccacgtgccatctcctcattggtttatagaagcaggtacccatgtgccatttcattggttatacccacgtgggtgaccgAAAGACGAACGAGgccagtggcggtaatgcacctaatttatgaaagttgccaatcgcaatataaagtcaagagaagaaaaagcctggaaggaggagagatgactagaaacgattcagttgaccgtttaaTGCGTGGCTTAATtagtggagtagaggaccttgtgcatttcaggtaaaataacaactcaatgatTAGAaacccaggacaaattagctagcaacagcaagctagctaaataggacaaattagctagcaagtgcaagctagctaaataggacaaattacctagcaagtgcaagctagctagctaaattgccataaatgtttaatgctttttgacctgtccccaaattaatataattggttcagagtttgttttgatattttaaccctgcgtgtcgtgatcacgtttggcgtggggggacaaaatacatttatgcacaatGGCGCATGCACACAGCCTGTTTGAGTTCCGTGTCAGCTAGCTGTCCTGTTCATCCTCCATGGGAATAGGGAAATGTAATAAATTTAGAGAGACTAGCACCCCAATCTGAACTATTCATATTCGCAGGAGAAGATCGTAAAAAAATTGATTTGTTAGATATGCTTTGCCTCGTTCTCCCACACTGATCAACTCACTGGCGAAATAATGTTTGTGTGAACGGCTAAATCCTTATTATTAGGAGTGTTGCTACATTCACATGGACCAGATGTGAGGTTATGGCCCATTATTACACATAGTAGGAGGACAGTTAGATATTTCCACCACAAGGTTATTATATGTGGTATAGACCTATAACAATACAAGAGTTGTTAACAAAACAACATTGCCGATGGGACTTAAGATGCTCTGATCAATAAGGTTTATTTGTCCATAGACATACCTACTGTAACACAATGTGTCACTCATGAACACTGGAAAGAGCCTTAAAGCCGTAGTCATGTCTGAACCCACGTATCGTCCTTTGAGATAGATGACTTATCGGGATTTTGGTTCCAGAATTGTGGTATCCGCTGTGAATCCACCCCCTCTTTCACAGTGAGAGTGTTCATATACCAACGCTAGTAGCAATCCATCAGTTCTGGGTTTAGGTTCAGAGTGTCTATGAAGAGGCTGATGTGAGCTGCCCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATATCCATCTCAATACTGCGAGCCCAGTTCTCCACATC
>TU743176
TGAGATGTTACCGTCGCATTTATTACACAGGGTAGAGGTAGCTAGCCTAGCATTTATTACACAGGGTAGAGGTAGCTAGCCTTGCATTTATTAGCATTTATTACACAGGGTAGAGGTAGCTAGCCTAGCATTTATTAGCATTTATTACACAGGGTAGAGGTAGCTAGCCTTGCTAACCCAGACTGACATGAATGAGTACGGTTCTGTGCACATAGTCCAATTAACATAATAATTtgatttcaaaatgtttacatgcTTTTACAAGAAGAcgatttccccccccccaaaaaaatcctgttaacatggacacatctgaaatcaggctacctgatgggactTTGATGAATGCAGAAAAATCGGCAATCAAAATAAAAACGCTCTCACACAACAACCCTGTTATTTTTTGAGGAGCCTATTAGAGACGGAGTTCGGACCtataaagtttgtatgtgaaaactataTTTCTAAGATGCATACTTGTGTATTCAAAGGAAATGTGTGCTGCTGGTTCTGGCACATCTGCAGGTCAAACACACCGCTGGAAATCTGATTAAGTTTCTTTACATGTCGTAATCATTTGAAAGATGGCGCAGAAAACCAGATGTTTAAATCGGCATATGCTTACTTCGATTATGATCGCATGCCGATTAAGATTAAGCAGAGTAAGGAGTAAATGACTATTGCATGATCTGCCTGCTGCCACAATCCATTTAATATTGGGTTAATAGTGTGCAGGGCTCCTCAAGTCCTGCCTCTTCCATCTTACTCAGTGATGAATATTCATTCAGGAATTCTGCAACAACCAGGGTAGGTAGTTTTAGTCAGACAGGGAGAAGGCAGTAACTAGTCAGTCTCTTTCTAAAACAGGAGACTTGCTCATTTAATTACAAGCCAATAAATCCAATTTACCCACGCTACTTTTACACAAACAGGCCTCTTTTGTTCCAGTgtcgcaaaatacattttgaaatctaTATCATTCAATTATTTCACCCACACGtctgttgccaagggctaaaatagaagtcagttatatttctgatgcagatcacGCTGCAAGGCCTGTAtcttccatctcctcattggtttatagaagcaggtacccacgtgccatctcctcattggtttatagaagcaggtacccatgtgccatttcattggttatacccacgtgggtgaccgAAAGACGAACGAGgccagtggcggtaatgcacctaatttatgaaagttgccaatcgcaatataaagtcaagagaagaaaaagcctggaaggaggagagatgactagaaacgattcagttgaccgtttaaTGCGTGGCTTAATtagtggagtagaggaccttgtgcatttcaggtaaaataacaactcaatgatTAGAaacccaggacaaattagctagcaacagcaagctagctaaataggacaaattagctagcaagtgcaagctagctaaataggacaaattacctagcaagtgcaagctagctagctaaattgccataaatgtttaatgctttttgacctgtccccaaattaatataattggttcagagtttgttttgatattttaaccctgcgtgtcgtgatcacgtttggcgtggggggacaaaatacatttatgcacaatGGCGCATGCACACAGCCTGTTTGAGTTCCGTGTCAGCTAGCTGTCCTGTTCATCCTCCATGGGAATAGGGAAATGTAATAAATTTAGAGAGACTAGCACCCCAATCTGAACTATTCATATTCGCAGGAGAAGATCGTAAAAAAATTGATTTGTTAGATATGCTTTGCCTCGTTCTCCCACACTGATCAACTCACTGGCGAAATAATGTTTGTGTGAACGGCTAAATCCTTATTATTAGGAGTGTTGCTACATTCACATGGACCAGATGTGAGGTTATGGCCCATTATTACACATAGTAGGAGGACAGTTAGATATTTCCACCACAAGGTTATTATATGTGGTATAGACCTATAACAATACAAGAGTTGTTAACAAAACAACATTGCCGATGGGACTTAAGATGCTCTGATCAATAAGGTTTATTTGTCCATAGACATACCTACTGTAACACAATGTGTCACTCATGAACACTGGAAAGAGCCTTAAAGCCGTAGTCATGTCTGAACCCACGTATCGTCCTTTGAGATAGATGACTTATCGGGATTTTGGTTCCAGAATTGTGGTATCCGCTGTGAATCCACCCCCTCTTTCACAGTGAGAGTGTTCATATACCAACGCTAGTAGCAATCCATCAGTTCTGGGTTTAGGTTCAGAGTGTCTATGAAGAGGCTGATGTGAGCTGCCCCTTGTGTACGTACTCCAGAGCTGTGGCGATGGTTCTCATATCCATCTCAATACTGCGAGCCCAGTTCTCCACATC

Function

NR:

description
PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU743171 False 2388 lncRNA 0.41 2 80745125 80747556
TU743176 True 2388 lncRNA 0.41 2 80745125 80747556

Neighbor

gene id symbol gene type direction distance location
LOC110528585 LOC106583707 coding downstream 21607 80650590 ~ 80723518 (-)
LOC110528589 LOC106583709 coding downstream 132339 80558564 ~ 80612786 (-)
LOC110529043 LOC106583712 coding downstream 392119 80261240 ~ 80353006 (-)
LOC110528575 LOC106583691 coding downstream 577846 80152879 ~ 80167279 (-)
LOC110528574 LOC106583691 coding downstream 616935 80111773 ~ 80128190 (-)
LOC110528602 NA coding upstream 551351 81298907 ~ 81299848 (-)
LOC110528600 LOC106566189 coding upstream 553980 81301536 ~ 81313006 (-)
tma7 NA coding upstream 603654 81351210 ~ 81353282 (-)
LOC118965322 LOC106583721 coding upstream 675576 81423132 ~ 81430600 (-)
LOC110528605 grip2 coding upstream 919130 81666686 ~ 81992596 (-)
G653909 NA non-coding downstream 100065 80644787 ~ 80645060 (-)
G653864 NA non-coding downstream 191347 80551042 ~ 80553778 (-)
G653846 NA non-coding downstream 218800 80525888 ~ 80526325 (-)
G653419 NA non-coding downstream 276217 80468368 ~ 80468908 (-)
G653977 NA non-coding upstream 31204 80778760 ~ 80780691 (-)
G653985 NA non-coding upstream 49618 80797174 ~ 80797725 (-)
G653990 NA non-coding upstream 52649 80800205 ~ 80800437 (-)
G653991 NA non-coding upstream 52960 80800516 ~ 80800718 (-)
G654022 NA non-coding upstream 117330 80864886 ~ 80865186 (-)
G653274 NA other downstream 397558 80345802 ~ 80347567 (-)
rab22a rab22a other downstream 700421 80025960 ~ 80046659 (-)
G653015 NA other downstream 801397 79943201 ~ 79943728 (-)
G652578 ncoa5 other downstream 1289737 79454075 ~ 79457103 (-)
G655289 NA other upstream 767981 81515537 ~ 81516722 (-)
G655297 NA other upstream 789001 81536557 ~ 81537098 (-)
G655316 slc6a6 other upstream 874847 81622403 ~ 81651265 (-)
G655387 NA other upstream 1005999 81753555 ~ 81753966 (-)

Expression


Co-expression Network