XLOC_025619


Basic Information

Item Value
gene id XLOC_025619
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40404169 ~ 40404939 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052747
ctagtTTCAAACGATATATATGTATCCTTGAtaaaaaatcaatataaatatatagatatggttaatgttttaataaattgcaCAACAATATACTCAACAAAATTAAAACTTAGACATTACAATTATTGACAACTCTATATTCTCAAATTACATTTCCGTCATAAattcagtatttttaaatattcagtaaaGATGTCCGTCCATGCTTAACCAAAATTGAACGCGACGACAAACATTTAAAGAATATTAATCATAAAACTCAAAACTATTAAAGTACTAGTTTTGGTATcgctaaaatgttgttttctatGACATTCATTCGACATCAACACCCACCTTTGATAACCGAGAGTTACAGACAGACGGTGACAAAGGACGAGAGAAAGGATCCATAAAGCAACAATCCACGCTGATTTTTATGCAGTTAAAATTGCCAACGTGATCAAAGCCGAAAGCGTCTGCCATTTACCGCCGCTCCGCTGGCCGTTAACAACACACAAGCTCGGAGAGTCATGATGACCGCGCCTCGCTTTCCGCGGCGAATCAGCGCTATTGTTCCCGCGAGTCCATGGGAATAAGGCCTAGTCCCGAAGCTCGGCGTTTTAGCCGCAAGTGTTGTCATTTTAGCAAGAGTTGCAGTTGAGGTCTGCTCTTTCGAATCTGACAATTCACACAGGTCTTTTCCGCCTGTGTGACCCGCTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052747 True 704 lncRNA 0.39 2 40404169 40404939

Neighbor

gene id symbol gene type direction distance location
XLOC_025618 NA coding upstream 51761 40351673 ~ 40352408 (+)
XLOC_025617 slc29a4 coding upstream 54436 40315410 ~ 40349733 (+)
XLOC_025616 AL928657.2 coding upstream 98138 40293506 ~ 40306031 (+)
XLOC_025615 cpsf4 coding upstream 108914 40289418 ~ 40295255 (+)
XLOC_025614 bud31 coding upstream 116328 40284598 ~ 40287841 (+)
XLOC_025620 tnrc18 coding downstream 2413 40407352 ~ 40488846 (+)
XLOC_025621 fscn1a coding downstream 171508 40576447 ~ 40589489 (+)
XLOC_025622 BX649559.2 coding downstream 267303 40672242 ~ 40688451 (+)
XLOC_025623 BX649559.1 coding downstream 386781 40791720 ~ 40794879 (+)
XLOC_025624 arpc1a coding downstream 391171 40796110 ~ 40804455 (+)
XLOC_025429 BX649540.1 misc upstream 10155133 30248739 ~ 30249036 (+)
XLOC_025609 BX649356.1 non-coding upstream 519213 39884819 ~ 39884956 (+)
XLOC_025606 NA non-coding upstream 771955 39626833 ~ 39632214 (+)
XLOC_025605 NA non-coding upstream 780244 39618568 ~ 39623925 (+)
XLOC_025601 BX537342.1 non-coding upstream 839670 39555762 ~ 39564499 (+)
XLOC_025627 NA non-coding downstream 493685 40898624 ~ 40902157 (+)
XLOC_025628 NA non-coding downstream 540101 40945040 ~ 40948999 (+)
XLOC_025629 NA non-coding downstream 638084 41043023 ~ 41066414 (+)
XLOC_025630 BX537310.1 non-coding downstream 1095470 41500409 ~ 41500525 (+)

Expression


Co-expression Network