XLOC_002562 (BX511100.5)


Basic Information

Item Value
gene id XLOC_002562
gene name BX511100.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6611075 ~ 6639167 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004765
tgaagcgctcggcctacaaatactttgcaggcactcctgcatTCGCTCCTCCTGAGTGGTTTAGCAGACATCGCTACAATGCCACTCCAGCTACAGTCAggtcagtaggagtgacgctcTACAAAATCCTGTGTGACTGTTTCCCCTTCAGAGGCACATagagggtcacgtccagaagcagactgacctttcctaggagcttgtcaacagTGCTCCAGCAACCCCATCCAAGATTGTCAGATGTGCCAGTGGAAGCAAAACTCCAGCAATTGACAGAAGTGAAGAACAAACTTTTGGGGAAACCAGACTCAGCCAGGCCAACAAACAGCAGCTTTCCACTGGCCGAATGAAATGAGCAGAGCTGCAGTTTGGCCATGAGAGAGCATCTATTGTTATTGTTGCCGATTTTGTCTTGATGTTGCTGGACAATGAAAAACAGACAGGAACTGGACAGCTTGTGATGGCAGAAACTGAGCAGAACAGCTGCTTCTACAAGCGACAGCCCAAATCACACTGACCATCATAAGACTGTTCTTCCAGGCCTGAACCCAGAGCTGCTTGTGTTCCCAgttggaggagattgtccatgtcccacatgggtgaagaaagagagCCATTCCAGACCCAGGAGTGCTGCTTTCACCCAGACAGCAGCTCTGGACACAGACACACAGGACGGCACCGCTGAGCTTCCTGGATATTTTCTCCTCTGCCTTCACATTTGGCTGATTCCGCATCCACAGACCagaggaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCggccaaacgctctcgcagagggcccgttgctgggacgAGGTGGATTCGGCTGTGTTTGCTGCGGtccgcaggtctgatggactgccaGTGGACATCAAGTACGTGTCAAAGGACCGGACCCCCGAGACactgaaagttgtatgttttgGTATTTTGTCTTGATGTTGCTGGACAATGAAGAACAGACAGGAACTGGACAGCTTGTGATGGCAGAAACTGAGCAGAACAGCTGCTTCTACAAGCGACAGCCCAAATCACACTGACCATCATAAGACTGTTCTTCCAGGCCTGAACCCAGAGCTGCTTGTGTTCCCAgttggaggagattgtccatgtGCCACATAGttgaagaaagaggagGTGACGTTgcggaagtttccctccatcctccccatcaccaccaccaccaccaggtcggcctcgtctccactcagggggttggcttcgccctgccttcatcttcaggcaggatctgccagctcatccagagttctgcactatagacggggcttacgccaaagaactttatgaaaggaccgtaacgaactctcattcatgcaaaga
>TCONS_00004766
CAAGCCATTCCAGACCCAGGAGTGCTGCTTTCACCCAGACAGCAGCTCTGGACACAGACACACAGGACGGCACCGCTGAGCTTCCTGGATATTTTCTCCTCTGCCTTCACATTTGGCTGATTCCGCATCCACAGACCagaggaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCggccaaacgctctcgcagagggcccgttgctgggacgAGGTGGATTCGGCTGTGTTTGCTGCGGtccgcaggtctgatggactgccaGTGGACATCAAGTACGTGTCAAAGGACCGGACCCCCGAGACactgaaagatggtcagggtcggctgccgctggaggtggcatgAAAGACCCACATCACttcagctcctgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagatGGTACGTCTTGATCCTGGAGCGTCCGGCTTcttgccaagatctccagagcttctgtgaggagaatGGCTGTC
>TCONS_00004767
ACACCGCTGAGCTTCCTGGATATTTTCTCCTCTGCCTTCACGTTTGACTgattctgcatccacagaccagataaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCGGCCCAAtgctctcgcagagacttgtacctgaagggcccgttgctggggcgaggtggattcggctctgtgtttgctggggtCCACAGGTCggatggactgccaGTGGACATCAAGTACGTGTCGAATGACCCCCGAGAGactgaaagacggtcagggtcggctgccgctggaggtggcattAAAGACCCACATCACTTCAGCTCTtgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgGTTCGTCTTGATCCTGGAGCGTCCGGCTCCTTGCCAAAATCTCCAGGGCTTCTGTGAGAACGGCTGTCTGGACGAGCGTCTGGCTAAGgaagtgctggtgcagctgatcgTGGCACTGAAACACTTCGAGAACCACGGCATTCTGCACCGGGACATCAAGCCAGAGAACCTACTGATCTtcacagagtcccaggacatcaagctgctggacttcagctgtggagatctgctgaagcgctcggcctacaaatactttgcaggcactcctgcatTCGCTCCTCCTGAGTGGTTTAGCAGACATCGCTACAATGCCACTCCAGCTACAGTCAggtcagtaggagtgacgctcTACAAAATCCTGTGTGACTGTTTCCCCTTCAGAGGCACATagagggtcacgtccagaagcagactgacctttcctaggagcttgtcaacagagtgccgtcagctgattcgctggtgtctcagtgcagcgCCGGCTGATCGGTCAAGTTTAGATGATCTTGAGCgccatccct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091421 ENSDARG00000095948

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004765 False 1377 processed_transcript 0.52 11 6611075 6638235
TCONS_00004766 False 520 transcribed_unprocessed_pseudogene 0.58 4 6622569 6623404
TCONS_00004767 True 912 transcribed_unprocessed_pseudogene 0.56 6 6637730 6639167

Neighbor

gene id symbol gene type direction distance location
XLOC_002561 NA coding downstream 10 6610157 ~ 6611065 (-)
XLOC_002560 chd1 coding downstream 22282 6521376 ~ 6588793 (-)
XLOC_002559 dcp2 coding downstream 117005 6473092 ~ 6494070 (-)
XLOC_002558 BX005434.1 coding downstream 138243 6472706 ~ 6472832 (-)
XLOC_002557 ca9 coding downstream 156689 6417356 ~ 6454386 (-)
XLOC_002563 BX511100.6 coding upstream 21892 6661059 ~ 6662868 (-)
XLOC_002564 BX511100.3 coding upstream 38506 6677673 ~ 6679486 (-)
XLOC_002565 NA coding upstream 54347 6693514 ~ 6695332 (-)
XLOC_002566 BX511100.4 coding upstream 86490 6725657 ~ 6727114 (-)
XLOC_002567 MACIR coding upstream 125942 6765109 ~ 6775271 (-)
XLOC_002556 NA non-coding downstream 201278 6389269 ~ 6409797 (-)
XLOC_002555 NA non-coding downstream 573329 6036881 ~ 6037746 (-)
XLOC_002554 CABZ01032180.1 non-coding downstream 660497 5950463 ~ 5950578 (-)
XLOC_002570 CABZ01061993.1 non-coding upstream 370207 7009374 ~ 7009490 (-)

Expression


Co-expression Network