G654225


Basic Information

Item Value
gene id G654225
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81177609 ~ 81184383 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU743492
CTTTGTTAGATAAATAGAACAGTCGGTAACCTGATGGAGACTGGACTATCAGGCAATATGTATGTTTATGTAGCACGGTTACAAAATACCTGCAACTTTTCCCAAATTCCCAGGTCTTCCGGAAATCCCGGGCGAAGGATTTCCAGCCGGAagattccctcctgattccgagGATTTCTGAAAAAACCTGGAAATGTTGGGAAAGTTACTGGAACCCTATTCTGTAGCAAAAGAAAACAAACCCAAAAAACTGCTACACTGTAATAATAAAAAAACCTTGGTATTATGAGAATATCCATAAGAATTCATCTACTTTTTCTTTTACATCATCACCTCTACATATCGGTGTAATTGTGCTTTGATAATGACATATTTGCGACTAGAACACagatacagaacatttcaaaacCCGCACAGAATTACAAGGGAAACCAAAATGAACTGATATCTGGAAAACTACCCACACACCCCTTATGTCAGTCAAGACCATGAGTAAATGAATAGACTGGAAATAACACATCTCACAAGTCATTCCTAAATCCCATGTCAAACCGTAGCCCCTACTACTCCCTAGGCACCGTAGAACTGAGAGGACTGGATAGGCGTACACAATGTGGAAGCTCTGTCTGTGACAGGTGGAATTGTCTCCATACAAGTACGTACGGCATAGTTGCTAGGGGATGATTTGGGATTATAGGATAGGGCACACATTTAACATGGATTAATGAAACAAGGCGTGTTGTTGGAATGAGGTTCAGCTGCTATCTGGTGGATTCAACCAGGCTGGTCACACAAACCAACACATTTcattacacaaacacacgcacgcacgcacgcacacgcactaTTAGGAGGGGAGCATCATCTTCTTCCTGTATCATCGAGGCAAACTTGGCAGCAATAATGCAAATGAAAAagaattaaacaatttaaaaaaaaggtaaTACATGCAGAAGACGATATACAAGCATGCATTTACAAGATGAGACCTGAAAAGTTCACCATTACGTTTTTACTAAATGGTAGAGCTCTCTACTACCTTCTCCCTAAATGCTTCCACTACTCATCTTGGTTGTTATTGATGTAACCCATTGTGGAGATGGCTACATtctcaagacagacagagactccCACTGGAACTGTACCCCGACGAAGCATCACAGCAGTTACGGTGCTATATCTACAGTGGAGTTGAGTGAAGCACAACATTTCTCCActgaccagggttggggtcaattccattccaATTCAGTCAATTCGGGAAGTTAATtgtctgaattgaaatggaattcatCCCCATCATACTATTATCCTAATAGGCCAGCCATCAGCAACTGAGAGCCAGGTGTTGGCTGTTATAAAGGCATGAGGCTCTGTTGATGTTTTTTGTACAGTGCTGTGTCTGTACACTAGTTAGATACATTTCCCATATCTGTCTGTTTTAGAGTGAGAAGTCCATATTTGCAGTGTGATCTTGAAGAGTAGAGTCTTCGTTTCCTGGTTCTATTCCAGACATAGACATAGAACATTCAGGATTTACTTTTATGATTCCAAATTCCCAAAAATGTTCTGGAACTTTTACAGAtatttatgtttggaaaaatcttcttcttctctcttaaTGTAATTGTTGTGATTGTTGATATTTCCCCCCTCCTTTCAGACAGTAAGAAAAGTTTCCATATTGAGAATCCGTTCACGTCAGATATTCTTGTTGTATGGTTGACTTTGGTTGCATACTGCCAGCCAGGTTATTCCTTCTTCCTCCTGTCCTGATTGGCTCAGGTATTTCCTGCTTTTTCCTGATTGGCTCAGCATGTGAAGTCTTCGAAGTTGCCCTGTGCTGGATGGTGAGGAAGCATGTTGGCAGGATACGAACCCGGCGTGCGCAGGTTCTCACAGGGCGTCTGAGGGAAGAGAAGTGAACCAATTATCAGAAAAAATGAAgggaagaagaaaggagagacagaaatTAGAGGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAACACAGACAGAATTTAGAGGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAACACAGACAGGAATAAGAAGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAAcacagacaggaataagaggTTCTCACACAGAGCCCGAGGGATGCGCGAACAGGAAACACAGACAGGAATAAGAGCTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAGGACAGACAGGAATAAGAGGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAGGACAGACAGGAATAAGAGGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAGGACAGACAGGAATAAGAAGTTCTCACACAGAGCCCTAGGGATGAGCGAACAGGAAGGACAGACAGGAATTAGAGGTTCTCACACAGAGCCCGAGAGATGAGCGAAAAGGAAAcacagacaggaataagaggTTCTCACACAGAGGCCGAGGGATAAGCGAACAGGAAGGACAGACAGGAATTAGAGGTTCTCACACAGAGCCCGAGAGATGAGCGAAAAGGAAAcacagacaggaataagaggTTCTCACACAGAGCCCGAGAGATGAGCgaacaggaagacagacagacattagagGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAACACAGACAGGAATAAGAGCTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGGAGGACAGACAGGAATAAGAGGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAGGACAGACAGGAATAAGAGGTTCTCACACAGAACCCGAGGGATGAGCGAACAGGAAACACAGACAGGAATAAGAGCTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAACACAGACAGGTATAAGAGGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAGGACAGACAGAAATAAGAAGTTCTCACACAGAGCCCGAGGGATGAGCGAACAGGAAGGACAGACAGGAATAAGAGGTTCTCACACAGAGGCAGAGGGATAAGCGAACAGGAAGGACAGACAGGAATTAGAGGTTCTCACACAGAGCCCGAGAGATGAGCGAAaaggaaacagacaggaacaagACTTCCGGTAGTAGAGAGGAGTGAACATACTGTAGTGGAAAGAAACCAAAGAGAAAATACTGCCAAAAATCACCCTTttcttttatagtgcactactaagtCTAaagtagtgaatagggtgccattttgggtaAGAAATATGAAACAGGCTGGATTAAACGAAGGAATGCAGGGTAAAGGAGGATGATATAACTCCATGCAGCGaaccaaccatctctctctctctctttccacagagggttctacatggttctatgtgaaaccaaaa
>TU743489
GTATAGGTGTTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGGTTGTATAGGTGGTTGTATAGGTGGTTGTATAGGTGTTTGTATAGGTGGTTGTATAGGTGTTTGTATAGGTGTTTGTATAGGTGCGcGACTCCATTACACTCGTTtgactctcctgcacctgacttccctgccacctacacacacggctctgacacacacacaagaaaggAGACCTCCATAGAATAATAAATGATCAAAAtgatatttacattttattataATATGCTTTGTTAGATAAATAGAACAGTCGGTAACCTGATGGAGACTGGACTATCAGGCAATATGTATGTTTATGTAGCACGGTTACAAAATACCTGCAACTTTTCCCAAATTCCCAGGTCTTCCGGAAATCCCGGGCGAAGGATTTCCAGCCGGAagattccctcctgattccgagGATTTCTGAAAAAACCTGGAAATGTTGGGAAAGTTACTGGAACCCTATTCTGTAGCAAAAGAAAACAAACCCAAAAAACTGCTACACTGTAATAATAAAAAAACCTTGGTATTATGAGAATATCCATAAGAATTCATCTACTTTTTCTTTTACATCATCACCTCTACATATCGGTGTAATTGTGCTTTGATAATGACATATTTGCGACTAGAACACagatacagaacatttcaaaacCCGCACAGAATTACAAGGGAAACCAAAATGAACTGATATCTGGAAAACTACCCACACACCCCTTATGTCAGTCAAGACCATGAGTAAATGAATAGACTGGAAATAACACATCTCACAAGTCATTCCTAAATCCCATGTCAAACCGTAGCCCCTACTACTCCCTAGGCACCGTAGAACTGAGAGGACTGGATAGGCGTACACAATGTGGAAGCTCTGTCTGTGACAGGTGGAATTGTCTCCATACAAGTACGTACGGCATAGTTGCTAGGGGATGATTTGGGATTATAGGATAGGGCACACATTTAACATGGATTAATGAAACAAGGCGTGTTGTTGGAATGAGGTTCAGCTGCTATCTGGTGGATTCAACCAGGCTGGTCACACAAACCAACACATTTcattacacaaacacacgcacgcacgcacgcacacgcactaTTAGGAGGGGAGCATCATCTTCTTCCTGTATCATCGAGGCAAACTTGGCAGCAATAATGCAAATGAAAAagaattaaacaatttaaaaaaaaggtaaTACATGCAGAAGACGATATACAAGCATGCATTTACAAGATGAGACCTGAAAAGTTCACCATTACGTTTTTACTAAATGGTAGAGCTCTCTACTACCTTCTCCCTAAATGCTTCCACTACTCATCTTGGTTGTTATTGATGTAACCCATTGTGGAGATGGCTACATtctcaagacagacagagactccCACTGGAACTGTACCCCGACGAAGCATCACAGCAGTTACGGTGCTATATCTACAGTGGAGTTGAGTGAAGCACAACATTTCTCCActgaccagggttggggtcaattccattccaATTCAGTCAATTCGGGAAGTTAATtgtctgaattgaaatggaattcatCCCCATCATACTATTATCCTAATAGGCCAGCCATCAGCAACTGAGAGCCAGGTGTTGGCTGTTATAAAGGCATGAGGCTCTGTTGATGTTTTTTGTACAGTGCTGTGTCTGTACACTAGTTAGATACATTTCCCATATCTGTCTGTTTTAGAGTGAGAAGTCCATATTTGCAGTGTGATCTTGAAGAGTAGAGTCTTCGTTTCCTGGTTCTATTCCAGACATAGACATAGAACATTCAGGATTTACTTTTATGATTCCAAATTCCCAAAAATGTTCTGGAACTTTTACAGAtatttatgtttggaaaaatcttcttcttctctcttaaTGTAATTGTTGTGATTGTTGATATTTCCCCCCTCCTTTCAGACAGTAAGAAAAGTTTCCATATTGAGAATCCGTTCACGTCAGATATTCTTGTTGTATGGTTGACTTTGGTTGCATACTGCCAGCCAGGTTATTCCTTCTTCCTCCTGTCCTGATTGGCTCAGGTATTTCCTGCTTTTTCCTGATTGGCTCAGCATGTGAAGTCTTCGAAGTTGCCCTGTGCTGGATGGTGAGGAAGCATGTTGGCAGGATACGAACCCGGCGTGCGCAGGTTCT

Function

NR:

description
acid-sensing ion channel 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU743492 False 3417 lncRNA 0.45 2 81177609 81183879
TU743489 True 2228 lncRNA 0.41 3 81181983 81184383

Neighbor

gene id symbol gene type direction distance location
LOC110528585 LOC106583707 coding downstream 454091 80650590 ~ 80723518 (-)
LOC110528589 LOC106583709 coding downstream 564823 80558564 ~ 80612786 (-)
LOC110529043 LOC106583712 coding downstream 824603 80261240 ~ 80353006 (-)
LOC110528575 LOC106583691 coding downstream 1010330 80152879 ~ 80167279 (-)
LOC110528574 LOC106583691 coding downstream 1049419 80111773 ~ 80128190 (-)
LOC110528602 NA coding upstream 114524 81298907 ~ 81299848 (-)
LOC110528600 LOC106566189 coding upstream 117153 81301536 ~ 81313006 (-)
tma7 NA coding upstream 166827 81351210 ~ 81353282 (-)
LOC118965322 LOC106583721 coding upstream 238749 81423132 ~ 81430600 (-)
LOC110528605 grip2 coding upstream 482303 81666686 ~ 81992596 (-)
G654200 NA non-coding downstream 43883 81133189 ~ 81133726 (-)
G654131 NA non-coding downstream 120620 81025529 ~ 81056989 (-)
G654136 NA non-coding downstream 146416 81030641 ~ 81031193 (-)
G654022 NA non-coding downstream 312423 80864886 ~ 80865186 (-)
G653991 NA non-coding downstream 376891 80800516 ~ 80800718 (-)
G654320 NA non-coding upstream 8792 81193175 ~ 81193740 (-)
G654325 NA non-coding upstream 24199 81208582 ~ 81208813 (-)
G654337 NA non-coding upstream 39261 81223644 ~ 81223862 (-)
G654361 NA non-coding upstream 78410 81262793 ~ 81263421 (-)
G653977 NA other downstream 396918 80778760 ~ 80780691 (-)
G653274 NA other downstream 830042 80345802 ~ 80347567 (-)
rab22a rab22a other downstream 1132905 80025960 ~ 80046659 (-)
G653015 NA other downstream 1233881 79943201 ~ 79943728 (-)
G655289 NA other upstream 331154 81515537 ~ 81516722 (-)
G655297 NA other upstream 352174 81536557 ~ 81537098 (-)
G655316 slc6a6 other upstream 438020 81622403 ~ 81651265 (-)
G655387 NA other upstream 569172 81753555 ~ 81753966 (-)
G655433 NA other upstream 648295 81832678 ~ 81833031 (-)

Expression


Co-expression Network