G654387


Basic Information

Item Value
gene id G654387
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 81328435 ~ 81346154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU743668
ACTCCATCATCTTTATTTGAGATTCTGTCAAGATACAAATCAGTATTAGATGAGTAGCTACACTAGACATACAAACATGATATACAGTATTAATATGACTAGTATTGTGGTAAGATTTAATCAGAGATCAACGTAAGTGTTCCTAAGCTTGACCATCCGAATCTTCAGCACCAGTATCTCTAAATTCAGCATCTCTGGTTGGATAAGGCTtcttctccatcaccatcacctcttcactcacttcctccatcctcctgTCCATGTACAGGGTTCTATTTCCCAGTCGCAGAGCTCTGTTCTGTTGGTGTTTTCCTTTTCAGCTCTACCTCCACAGGGTAATGGTCGCTCACCTTCAGGGCCTAATACAGCAGAGTAGTTAGATGTTGAGACATGAGCCAGACGGCTCAACTTTGACATGCACTGTATTTCTAGGACAGGTTGTCAAAATGTAGGCTACTAACATGTTCATTTCATCTACTTAtaatattgtaatcaaaacttctACCAGGATGGAATTAGTCTGTAACCTgcatactgtcacgttctgaccttagttcttttgttatgtctttgttttaggttggtcatggtgtgagttggggtgggctgtctatgtttgtttttctatgttgtgttttgcgtttggcctggtatggttctcaatcagagacaggtgtcattagttgtctctgattgagaatcatacttaggtagccttttcccacctgtgtttcgtgggtgattgttttctgtctttgtgtatgtcaccagacaggactgtttcgtttcgtgtcatactctttgttatttttgttttagttgttctgtgtttaataaattcatcatgaacacataccacgctgcgcattggtcctccgatccttcatactcctcagACGAGGACGACGAACGTTACACATACTTACATCTTCTTCTGAAAGCCCGTATTCAATCTGGAAGTTGAATGGTTTGGCAGAGTTTGGCACGACGGCGTCAAGCATGTCATCCCCATAGATCACAATCCTAGATGTTGATCAGAAAAGGAAGTCAGCAGTCATTCCATATTACACACAAGTACACTAGTTTTATAATAGTTCTTATGACAGCTCTTATGACATTTTAACCACCTTTAAACAATACCAAAGAAATGTCAAATGAACTCCATAGGTGATCATCTGTTTCATACATGAGGCGTTCAATAATGAATTTCACAAATCACAAATCACCTGTCATAAGTGTTATCGTTGCCTGTGTTTGCTGTGGTATCCACATCATCTTTAATCAGCCAGTGGAAATTTTTGTCACTCCGGATACGGATGGCTTTCATGCCCTTTTTAGAAAGGTAGGAACCGTCTGCATTGAAGTCACCTAGGATCATAACGTTCTGGTACAGAGAGAAACATTCAACAACAAAGTTACGTTTCATCCAGAATAAGGAAACTGTTTTTAGTTATCTTGAAATCACCATGTGTCTGGTGTTGTATTTTACTTGTCAAAGGCTCATATATAGTCTTTGGTGACAAGTGCACTTTCTAAACCCAAGGGAGGTGTTAAGCTCTGTCAATGGCTTATTTCAGAACTTACATCAGTCTCCCATTTATTTTTCACTTCCAGGAAGACATCATAAAGCTTATCCAGCTCCTTCACTGAATCGTCAGGCTTGGTGTGCACTGGGATCAGTACCAAGTCCTCCAGCACTGAGAAACACAGGAAGATATGAGAAGTATATATTACAGCTGTTTATGATTGGGCTGTCATTCTCTGCTGCAAtatccagctgtctgtctgtcacgttCATATTATTTGCTAAATCTAATGCCATATGGATGGATCATGCTTAATTCTAGCACTCCTGTGCCCCTTACCAGTTTTGTGACATTTGAAGCGGAGAATGTAAGGCTCCCTGGCGAAGGCGTCCACATCTCCAGGCTGGTTGTCCTCATATTGCCAGGAACCAACCAAGTCCACCAAATCATTCCTTTCAGAATAAACAATACAACACATTTAATAGCATTAGTCATGCattaaatcttttttttaatCAGATAACAATGTGAAAAAATCAATAGCATCAGATAGAGGTTTATGAGGGTAAAGTTGAATGGGTTTGAATTGCACCTGTACAGATACATAAACTGCTCCTTGTATTTGTCTCTTCCCAGACGAGGGCTGATTTTCAGAGTGTAGTGTTGTTCCTTATTGGCCCTGTAATGACACACCTGTAATGAGTGATACTTATCATGTAAGGCCAGGAGTTCCCCAGTTGTATATTTTATAGCGTCACATGAGGGAAAACACTTGACTTATTTAATTCCTCCAGGAACTTTTTCACTGAAGTTTCTCTCTCATCCACCACCTCCAGAATCAGTATGATGTCATAGCGAGACACAATCTGATAGGACAAAAGGAAGGAAAATAAGAAAAAGTTAATTAGTTTATCTGTTTATATGTAGGACAACATCCTTG

Function

NR:

description
PREDICTED: deoxyribonuclease gamma-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU743668 True 2466 lncRNA 0.40 3 81328435 81346154

Neighbor

gene id symbol gene type direction distance location
LOC110528600 LOC106566189 coding downstream 15429 81301536 ~ 81313006 (-)
LOC110528602 NA coding downstream 28692 81298907 ~ 81299848 (-)
LOC110528585 LOC106583707 coding downstream 604917 80650590 ~ 80723518 (-)
LOC110528589 LOC106583709 coding downstream 715649 80558564 ~ 80612786 (-)
LOC110529043 LOC106583712 coding downstream 975429 80261240 ~ 80353006 (-)
tma7 NA coding upstream 5056 81351210 ~ 81353282 (-)
LOC118965322 LOC106583721 coding upstream 76978 81423132 ~ 81430600 (-)
LOC110528605 grip2 coding upstream 320532 81666686 ~ 81992596 (-)
sec13 sec13 coding upstream 775184 82121338 ~ 82132214 (-)
LOC110528607 LOC106566201 coding upstream 799114 82145268 ~ 82152444 (-)
G654390 NA non-coding downstream 19007 81309225 ~ 81309428 (-)
G654361 NA non-coding downstream 65014 81262793 ~ 81263421 (-)
G654337 NA non-coding downstream 104573 81223644 ~ 81223862 (-)
G654325 NA non-coding downstream 119622 81208582 ~ 81208813 (-)
G654414 NA non-coding upstream 33751 81379905 ~ 81380490 (-)
G654488 NA non-coding upstream 52514 81398668 ~ 81399353 (-)
G654513 NA non-coding upstream 101281 81447435 ~ 81450615 (-)
G654523 NA non-coding upstream 122992 81469146 ~ 81469417 (-)
G653977 NA other downstream 547744 80778760 ~ 80780691 (-)
G653274 NA other downstream 980868 80345802 ~ 80347567 (-)
rab22a rab22a other downstream 1283731 80025960 ~ 80046659 (-)
G653015 NA other downstream 1384707 79943201 ~ 79943728 (-)
G655289 NA other upstream 169383 81515537 ~ 81516722 (-)
G655297 NA other upstream 190403 81536557 ~ 81537098 (-)
G655316 slc6a6 other upstream 276249 81622403 ~ 81651265 (-)
G655387 NA other upstream 407401 81753555 ~ 81753966 (-)
G655433 NA other upstream 486524 81832678 ~ 81833031 (-)

Expression


Co-expression Network