Fish Transcriptome and Expression Database

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model fish

XLOC_025628

Basic Information

Item	Value
gene id	XLOC_025628
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	40945040 ~ 40948999 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052752
CAACCAGATATGAGGACAGATGACAAACGGCGATATCGACGCCAAACCTGatatttctttaataatatatgtttatCAAACTATTTAAAAGAAAACCAGTTAATTACTTCAGTTCGAAAACAACGCAAGTGCTTCTACTTGAAAATAAAACCTGCAAAATGCGAAAAACTGTGGCAAGGAAAGAACATCACCTCTCAGGCCTGAACTCCTGAGGAGAATCC

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00052752	True	221	lncRNA	0.38	2	40945040	40948999

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025627	NA	coding	upstream	42883	40898624 ~ 40902157 (+)
XLOC_025626	mmd2a	coding	upstream	73674	40841897 ~ 40871366 (+)
XLOC_025625	arpc1b	coding	upstream	124428	40809011 ~ 40820612 (+)
XLOC_025624	arpc1a	coding	upstream	140585	40796110 ~ 40804455 (+)
XLOC_025623	BX649559.1	coding	upstream	150161	40791720 ~ 40794879 (+)
XLOC_025629	NA	coding	downstream	94024	41043023 ~ 41066414 (+)
XLOC_025630	BX537310.1	coding	downstream	551410	41500409 ~ 41500525 (+)
XLOC_025631	card11	coding	downstream	609683	41558682 ~ 41632059 (+)
XLOC_025632	gna12a	coding	downstream	698638	41647637 ~ 41706238 (+)
XLOC_025633	eif3ba	coding	downstream	765967	41714966 ~ 41724932 (+)
XLOC_025429	BX649540.1	misc	upstream	10696004	30248739 ~ 30249036 (+)
XLOC_025619	NA	non-coding	upstream	540101	40404169 ~ 40404939 (+)
XLOC_025618	NA	non-coding	upstream	592632	40351673 ~ 40352408 (+)
XLOC_025609	BX649356.1	non-coding	upstream	1060084	39884819 ~ 39884956 (+)
XLOC_025636	NA	non-coding	downstream	1005894	41954893 ~ 41962746 (+)
XLOC_025639	NA	non-coding	downstream	1245211	42194210 ~ 42206974 (+)
XLOC_025640	NA	non-coding	downstream	1541460	42490459 ~ 42497766 (+)

Expression

Co-expression Network