G655190 (LOC106583753)


Basic Information

Item Value
gene id G655190
gene name LOC106583753
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 82872727 ~ 82876040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU744706
tttattagAATGGCATGTATAGAAAGAAACAACAGAGGAAAAACTTCACGTGGATTCAAACGACAGAACTTTTCCTGTGAGGATTtaaggaaacaaacaaaaaaaaaaagacattgcaAGAAGTGAGACGGTATCTAATCAGTAGAATGTGTTGATATCTATTCTGCCACGATAACAGACACGCTCATGTTTAAGTGCAATATTGTATTGTTTCGTGTCCTTTTGGTTGGGTTATAGTCATGTGCATATTGTGTATTGAAggaaaagggaaaggggggagacctagtcagttgtacaactgaatgccttcaactgaaacgtGTCTTCCGCATTAGAAAGAGTTGGAATGAGAGCACTGCTTTTATATAGTCATCCttatggtttaaaaaaaaactgagcCAAAACAAATGCCGCATTGCTGATCCTAGGGACGCAAAATTCTTGTAACTTTCTCCAAAATTCCCAAAGTttcccagaaatcctggttggaggattgcAGATTTCCTGATTGATTGCCTTCTGATTCAGGGAATCTTCAAAACGTGATTTCTAGAAAAACCAACGGGTGGAGTTACCAGATTGTTGCGTCCCGAGCTAATCCCCCTGAATCCTCTCCAAAACGTTCCTATCAGTCACTACTGTCTCAGTGATACTACGAGATGCGCAGAACAACAAACATATTTTGCTGAACCATCAAGAGATGTTTTGCATAGACATCAATTCAAATTGAACTCATGCAAATGGGCTACAGTGCGAGACGTTAggagagaacagaaaacacacacgGTGGACGGAGGTTTTTGACAACAACGTTCAGTGGGGTGTCTGCATCCCGAAAAAAGGCACCCTTGCCAATACAGTGCACTATATGTCAAGCGAGTgtagtgaaaagtagtgcacagtACCGGGAAGAAGGCAGCTTTTGAGACAGACTATGAATGAGCGATTTACTAGTAAGTGAACACAGTAAATACCCTACAACTTACATCGTTTCGGTGTTTTTATAAAAATAACTGAGTTCATATTTTACGGCATATTTATAAAAACTCAACACAAAACGTCTCTAATGCaataacaccccagtgagataGAGTTATAATGTAttacagtggtagtagtagtagtagtagtagtagtagtagtagtagtagtatatatgttgtcctgtctgtctctattggTCTGTAGGCTACAGCAGATGCACTCCTTCACTTCAGTATTGCTTGTCTTTCACACTGCTTGTGGTTATTTAGGTCTATAGAGTCTGTCAACACAAAGACCCAGCCCAATGTGTGTTTaaacctatgtgtgtgtgtttaaacatgtgtgtgtgtttcagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgcgcttgtgtgtgtgtgtgtgtggctgagctAACATGCAGAATTAGTCAAGAATAGCTAGTAAGTGTCATATTAGTTTGACAGCCAGGGTGAGAAAAACATCCTCATCTCTCATCACTCATCCCTCATCCCAAGAGGGCTTTACGTGTTTAAATCCCAGTAGGACAGTTGGAAATACATGTACCCTGCTTTTAGCGTGTTAAATTATTCATTATATTGACATATAAGATGTGGAAAAACACTTTCTCTCTATTCAACAGAAGCCTACGGTTGCTAAAAAATACCTTTGCTTTagtaggagacagacaggaagaaagGCCTTCTTTAGTCAAAACTCAGGACAGGAAGGAAGAGAAGTATTAGTAGTTTTGGTAGTAGTACCTGGAGCCATTTTCCTCCTAAAAAAAACTAACATTTTATTGTAAAAGTAATACTCgtcataataaataaaataaattaaacaacACATTTCGAATAAaatgtgacaaaaaaaaagacaaaaataaCACTAAAAGAGAGGTCTGAAGTcatttttaaaaacgtttttttttttttttttacatcgttcttcaaatacaaaaaaaaaaaatcttggagTTGTATAAAGGAAGGAACACACATCGTTGTATAAAAGCTGATACAGGAACATACAGTCGAGCATCAGTCACCAGTGTTTAAATGTATAAACTCCTTGCGGGAATATTTCAGTAGAAGTCGATAATAAATAAAAGCAGTAGAGTAGAATGAAAGGACGGTGAGAGGAGGATAAAAGTGAAGGAAAGAATAGTCTGTGGCTGCATCTCAAACAGAACCCTTTTCCATATACaatacactacttttgatcagaaccCTGGCGGGGGCTAGAACCCTGGAGCACCATTAGCTCTGGTCAACAGAACTGCACTATAAAGGTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGATGGGTTCCATCTGAGATGGGTTCCATCTGAGATGGGTTCCATTTAAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGATACAGACTATGGCTTGATAGGCTTCCTTGGCCTGACAACATAAATATAGCTTTCTATACGAACTAATCCAAAGTTCCTCTTAGTGTATTGAAGGTAAGGGCTAAAGTCTCTAGAATGTACTACACAactagaagagagaagagaatggaggaatataacaacaacaaaacaacagacCTTCCTTccattctccccccccccttctttcttGTCTCAGGGACGGAAGTGAGAgctggagagaaggatggagtgaTGGCGGGATGGAGAAGGACGTCATCAGTATGGCGCAAACTTCTGTCTCTCCGGTTTCTTCCCGATCCCATTGGCCGAGGAGATCTTCGCTGTGTAGGAGATCTGGGCCTGGGCATGGGCCCCAGCGGCGGCGGCTGCATTGGCGGCAGGGTTGGATAAAGCCAGGAAGGGTACAGATTGGATGGATTTCATGGATTGCATTCCAAGGAGGCTGGAGAGGGGGAGGGCCCCATAGGGGTGGGTGCCCATCATGGGGACTGCAgcgtgggggtgggggtgggacaTGCCAGGGCAGCCCATGGCAGCCAGGGTGGCAGCAGCCACAGCTGAAGACTGGGCTGGGGAGGGCGGTTGGCTGTAGGCCATGGTGAGGTCAGCAGGGTTCGACATGGAGGAAGACTGGGCGGTGGATTTGGCGGTCTCTAAACTGCACAAggt
>TU744707
tttattagAATGGCATGTATAGAAAGAAACAACAGAGGAAAAACTTCACGTGGATTCAAACGACAGAACTTTTCCTGTGAGGATTtaaggaaacaaacaaaaaaaaaaagacattgcaAGAAGTGAGACGGTATCTAATCAGTAGAATGTGTTGATATCTATTCTGCCACGATAACAGACACGCTCATGTTTAAGTGCAATATTGTATTGTTTCGTGTCCTTTTGGTTGGGTTATAGTCATGTGCATATTGTGTATTGAAggaaaagggaaaggggggagacctagtcagttgtacaactgaatgccttcaactgaaacgtGTCTTCCGCATTAGAAAGAGTTGGAATGAGAGCACTGCTTTTATATAGTCATCCttatggtttaaaaaaaaactgagcCAAAACAAATGCCGCATTGCTGATCCTAGGGACGCAAAATTCTTGTAACTTTCTCCAAAATTCCCAAAGTttcccagaaatcctggttggaggattgcAGATTTCCTGATTGATTGCCTTCTGATTCAGGGAATCTTCAAAACGTGATTTCTAGAAAAACCAACGGGTGGAGTTACCAGATTGTTGCGTCCCGAGCTAATCCCCCTGAATCCTCTCCAAAACGTTCCTATCAGTCACTACTGTCTCAGTGATACTACGAGATGCGCAGAACAACAAACATATTTTGCTGAACCATCAAGAGATGTTTTGCATAGACATCAATTCAAATTGAACTCATGCAAATGGGCTACAGTGCGAGACGTTAggagagaacagaaaacacacacgGTGGACGGAGGTTTTTGACAACAACGTTCAGTGGGGTGTCTGCATCCCGAAAAAAGGCACCCTTGCCAATACAGTGCACTATATGTCAAGCGAGTgtagtgaaaagtagtgcacagtACCGGGAAGAAGGCAGCTTTTGAGACAGACTATGAATGAGCGATTTACTAGTAAGTGAACACAGTAAATACCCTACAACTTACATCGTTTCGGTGTTTTTATAAAAATAACTGAGTTCATATTTTACGGCATATTTATAAAAACTCAACACAAAACGTCTCTAATGCaataacaccccagtgagataGAGTTATAATGTAttacagtggtagtagtagtagtagtagtagtagtagtagtagtagtagtatatatgttgtcctgtctgtctctattggTCTGTAGGCTACAGCAGATGCACTCCTTCACTTCAGTATTGCTTGTCTTTCACACTGCTTGTGGTTATTTAGGTCTATAGAGTCTGTCAACACAAAGACCCAGCCCAATGTGTGTTTaaacctatgtgtgtgtgtttaaacatgtgtgtgtgtttcagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgcgcttgtgtgtgtgtgtgtgtggctgagctAACATGCAGAATTAGTCAAGAATAGCTAGTAAGTGTCATATTAGTTTGACAGCCAGGGTGAGAAAAACATCCTCATCTCTCATCACTCATCCCTCATCCCAAGAGGGCTTTACGTGTTTAAATCCCAGTAGGACAGTTGGAAATACATGTACCCTGCTTTTAGCGTGTTAAATTATTCATTATATTGACATATAAGATGTGGAAAAACACTTTCTCTCTATTCAACAGAAGCCTACGGTTGCTAAAAAATACCTTTGCTTTagtaggagacagacaggaagaaagGCCTTCTTTAGTCAAAACTCAGGACAGGAAGGAAGAGAAGTATTAGTAGTTTTGGTAGTAGTACCTGGAGCCATTTTCCTCCTAAAAAAAACTAACATTTTATTGTAAAAGTAATACTCgtcataataaataaaataaattaaacaacACATTTCGAATAAaatgtgacaaaaaaaaagacaaaaataaCACTAAAAGAGAGGTCTGAAGTcatttttaaaaacgtttttttttttttttttacatcgttcttcaaatacaaaaaaaaaaaatcttggagTTGTATAAAGGAAGGAACACACATCGTTGTATAAAAGCTGATACAGGAACATACAGTCGAGCATCAGTCACCAGTGTTTAAATGTATAAACTCCTTTCGATAATAAATAAAAGCAGTAGAGTAGAATGAAAGGACGGTGAGAGGAGGATAAAAGTGAAGGAAAGAATAGTCTGTGGCTGCATCTCAAACAGAACCCTTTTCCATATACaatacactacttttgatcagaaccCTGGCGGGGGCTAGAACCCTGGAGCACCATTAGCTCTGGTCAACAGAACTGCACTATAAAGGTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGATGGGTTCCATCTGAGATGGGTTCCATCTGAGATGGGTTCCATTTAAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGATACAGACTATGGCTTGATAGGCTTCCTTGGCCTGACAACATAAATATAGCTTTCTATACGAACTAATCCAAAGTTCCTCTTAGTGTATTGAAGGTAAGGGCTAAAGTCTCTAGAATGTACTACACAactagaagagagaagagaatggaggaatataacaacaacaaaacaacagacCTTCCTTccattctccccccccccttctttcttGTCTCAGGGACGGAAGTGAGAgctggagagaaggatggagtgaTGGCGGGATGGAGAAGGACGTCATCAGTATGGCGCAAACTTCTGTCTCTCCGGTTTCTTCCCGATCCCATTGGCCGAGGAGATCTTCGCTGTGTAGGAGATCTGGGCCTGGGCATGGGCCCCAGCGGCGGCGGCTGCATTGGCGGCAGGGTTGGATAAAGCCAGGAAGGGTACAGATTGGATGGATTTCATGGATTGCATTCCAAGGAGGCTGGAGAGGGGGAGGGCCCCATAGGGGTGGGTGCCCATCATGGGGACTGCAgcgtgggggtgggggtgggacaTGCCAGGGCAGCCCATGGCAGCCAGGGTGGCAGCAGCCACAGCTGAAGACTGGGCTGGGGAGGGCGGTTGGCTGTAGGCCATGGTGAGGTCAGCAGGGTTCGACATGGAGGAAGACTGGGCGGTGGATTTGGCGGTCTCTAAACTGCACAAggt
>TU744708
tttattagAATGGCATGTATAGAAAGAAACAACAGAGGAAAAACTTCACGTGGATTCAAACGACAGAACTTTTCCTGTGAGGATTtaaggaaacaaacaaaaaaaaaaagacattgcaAGAAGTGAGACGGTATCTAATCAGTAGAATGTGTTGATATCTATTCTGCCACGATAACAGACACGCTCATGTTTAAGTGCAATATTGTATTGTTTCGTGTCCTTTTGGTTGGGTTATAGTCATGTGCATATTGTGTATTGAAggaaaagggaaaggggggagacctagtcagttgtacaactgaatgccttcaactgaaacgtGTCTTCCGCATTAGAAAGAGTTGGAATGAGAGCACTGCTTTTATATAGTCATCCttatggtttaaaaaaaaactgagcCAAAACAAATGCCGCATTGCTGATCCTAGGGACGCAAAATTCTTGTAACTTTCTCCAAAATTCCCAAAGTttcccagaaatcctggttggaggattgcAGATTTCCTGATTGATTGCCTTCTGATTCAGGGAATCTTCAAAACGTGATTTCTAGAAAAACCAACGGGTGGAGTTACCAGATTGTTGCGTCCCGAGCTAATCCCCCTGAATCCTCTCCAAAACGTTCCTATCAGTCACTACTGTCTCAGTGATACTACGAGATGCGCAGAACAACAAACATATTTTGCTGAACCATCAAGAGATGTTTTGCATAGACATCAATTCAAATTGAACTCATGCAAATGGGCTACAGTGCGAGACGTTAggagagaacagaaaacacacacgGTGGACGGAGGTTTTTGACAACAACGTTCAGTGGGGTGTCTGCATCCCGAAAAAAGGCACCCTTGCCAATACAGTGCACTATATGTCAAGCGAGTgtagtgaaaagtagtgcacagtACCGGGAAGAAGGCAGCTTTTGAGACAGACTATGAATGAGCGATTTACTAGTAAGTGAACACAGTAAATACCCTACAACTTACATCGTTTCGGTGTTTTTATAAAAATAACTGAGTTCATATTTTACGGCATATTTATAAAAACTCAACACAAAACGTCTCTAATGCaataacaccccagtgagataGAGTTATAATGTAttacagtggtagtagtagtagtagtagtagtagtagtagtagtagtagtatatatgttgtcctgtctgtctctattggTCTGTAGGCTACAGCAGATGCACTCCTTCACTTCAGTATTGCTTGTCTTTCACACTGCTTGTGGTTATTTAGGTCTATAGAGTCTGTCAACACAAAGACCCAGCCCAATGTGTGTTTaaacctatgtgtgtgtgtttaaacatgtgtgtgtgtttcagtgtttgtgtgtgtgtgtgtgtgcgcttgtgtgtgtgtgtgtgtggctgagctAACATGCAGAATTAGTCAAGAATAGCTAGTAAGTGTCATATTAGTTTGACAGCCAGGGTGAGAAAAACATCCTCATCTCTCATCACTCATCCCTCATCCCAAGAGGGCTTTACGTGTTTAAATCCCAGTAGGACAGTTGGAAATACATGTACCCTGCTTTTAGCGTGTTAAATTATTCATTATATTGACATATAAGATGTGGAAAAACACTTTCTCTCTATTCAACAGAAGCCTACGGTTGCTAAAAAATACCTTTGCTTTagtaggagacagacaggaagaaagGCCTTCTTTAGTCAAAACTCAGGACAGGAAGGAAGAGAAGTATTAGTAGTTTTGGTAGTAGTACCTGGAGCCATTTTCCTCCTAAAAAAAACTAACATTTTATTGTAAAAGTAATACTCgtcataataaataaaataaattaaacaacACATTTCGAATAAaatgtgacaaaaaaaaagacaaaaataaCACTAAAAGAGAGGTCTGAAGTcatttttaaaaacgtttttttttttttttttacatcgttcttcaaatacaaaaaaaaaaaatcttggagTTGTATAAAGGAAGGAACACACATCGTTGTATAAAAGCTGATACAGGAACATACAGTCGAGCATCAGTCACCAGTGTTTAAATGTATAAACTCCTTGCGGGAATATTTCAGTAGAAGTCGATAATAAATAAAAGCAGTAGAGTAGAATGAAAGGACGGTGAGAGGAGGATAAAAGTGAAGGAAAGAATAGTCTGTGGCTGCATCTCAAACAGAACCCTTTTCCATATACaatacactacttttgatcagaaccCTGGCGGGGGCTAGAACCCTGGAGCACCATTAGCTCTGGTCAACAGAACTGCACTATAAAGGTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGATGGGTTCCATCTGAGATGGGTTCCATCTGAGATGGGTTCCATTTAAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGTTGGGTTCCATCTGAGATGGGTTCCATTTGAGATGGGTTCCATTTGAGATACAGACTATGGCTTGATAGGCTTCCTTGGCCTGACAACATAAATATAGCTTTCTATACGAACTAATCCAAAGTTCCTCTTAGTGTATTGAAGGTAAGGGCTAAAGTCTCTAGAATGTACTACACAactagaagagagaagagaatggaggaatataacaacaacaaaacaacagacCTTCCTTccattctccccccccccttctttcttGTCTCAGGGACGGAAGTGAGAgctggagagaaggatggagtgaTGGCGGGATGGAGAAGGACGTCATCAGTATGGCGCAAACTTCTGTCTCTCCGGTTTCTTCCCGATCCCATTGGCCGAGGAGATCTTCGCTGTGTAGGAGATCTGGGCCTGGGCATGGGCCCCAGCGGCGGCGGCTGCATTGGCGGCAGGGTTGGATAAAGCCAGGAAGGGTACAGATTGGATGGATTTCATGGATTGCATTCCAAGGAGGCTGGAGAGGGGGAGGGCCCCATAGGGGTGGGTGCCCATCATGGGGACTGCAgcgtgggggtgggggtgggacaTGCCAGGGCAGCCCATGGCAGCCAGGGTGGCAGCAGCCACAGCTGAAGACTGGGCTGGGGAGGGCGGTTGGCTGTAGGCCATGGTGAGGTCAGCAGGGTTCGACATGGAGGAAGACTGGGCGGTGGATTTGGCGGTCTCTAAACTGCACAAggt

Function

NR:

description
poly(rC)-binding protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU744706 False 3282 lncRNA 0.43 2 82872727 82876040
TU744707 False 3261 lncRNA 0.43 3 82872727 82876040
TU744708 True 3158 lncRNA 0.42 3 82872727 82876040
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110525199 LOC106583750 coding upstream 89805 82778373 ~ 82782922 (+)
LOC110525202 LOC106583751 coding upstream 94684 82773777 ~ 82778043 (+)
dock3 LOC106583746 coding upstream 107962 82354400 ~ 82764765 (+)
LOC110529049 LOC106583745 coding upstream 542857 82198333 ~ 82329870 (+)
LOC110529047 LOC106583744 coding upstream 692485 82162427 ~ 82180242 (+)
LOC118965402 NA coding downstream 279579 83155619 ~ 83155719 (+)
LOC118965370 NA coding downstream 389496 83265536 ~ 83310372 (+)
dag1 dag1 coding downstream 678243 83554283 ~ 83616043 (+)
LOC110529053 LOC106583755 coding downstream 835321 83711361 ~ 83712203 (+)
nicn1 nicn1 coding downstream 883698 83759738 ~ 83782465 (+)
G654983 NA non-coding upstream 100678 82690163 ~ 82772049 (+)
G655126 NA non-coding upstream 234890 82637308 ~ 82637837 (+)
G655106 NA non-coding upstream 272899 82598823 ~ 82599828 (+)
G655070 NA non-coding upstream 305907 82516943 ~ 82566820 (+)
G655040 NA non-coding upstream 418007 82454080 ~ 82454720 (+)
G655206 NA non-coding downstream 22705 82898745 ~ 82899477 (+)
G655209 NA non-coding downstream 26053 82902093 ~ 82902423 (+)
G655210 NA non-coding downstream 26792 82902832 ~ 82905957 (+)
G655241 NA non-coding downstream 90472 82966512 ~ 82967475 (+)
G655275 NA non-coding downstream 165372 83041412 ~ 83042594 (+)
G655042 NA other upstream 413060 82459085 ~ 82459667 (+)
G654782 NA other upstream 921335 81951002 ~ 81951392 (+)
G654673 NA other upstream 1064000 81744527 ~ 81808727 (+)
G654603 NA other upstream 1297304 81574942 ~ 81575423 (+)
G654265 LOC106611445 other upstream 1521527 81326323 ~ 81352422 (+)
G656125 NA other downstream 279974 83156014 ~ 83156319 (+)
G656264 NA other downstream 391108 83267148 ~ 83272209 (+)
G656551 NA other downstream 682797 83558837 ~ 83560518 (+)
G657228 NA other downstream 1627509 84503549 ~ 84520418 (+)
G657254 NA other downstream 1675956 84551996 ~ 84554773 (+)

Expression

G655190(LOC106583753) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G655190(LOC106583753) Expression in each Bioproject

Bar chart with 15 bars.
G655190(LOC106583753) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
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Co-expression Network