G657879


Basic Information

Item Value
gene id G657879
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 84167402 ~ 84171387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU747842
TATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCCACATTAGACCATTCATCACAACGCTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCCAGattagaccagtcatcacaacgcTATTAACCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCCACATTAGACCAGTTATCACAACGCTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTCACTCAACATAAGGTAACCAATAGAAAATAACCG
>TU747843
TTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCCACATTAGACCAGTTATCACAACGCTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTCACTCAACATAAGGTAACCAATAGAAAATAACCG
>TU747841
TATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCATATTTACTCcacattagaccagtcatcacaacgcTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCCACATTAGACCATTCATCACAACGCTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacACCATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTATTAACCTACCGTATTTACTCcacattagaccagtcatcacaacgcTAGCAGCCTACCGTATTTACTCcacattagaccagtcatcacaacgcTATTAACCTACCATATTTACTCcacattagaccagtcatcacaacgcTATTAACCTACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU747842 False 696 lncRNA 0.44 3 84167402 84171387
TU747843 False 270 lncRNA 0.43 2 84167402 84169222
TU747841 True 563 lncRNA 0.42 2 84170120 84171387

Neighbor

gene id symbol gene type direction distance location
LOC110528630 stl3 coding downstream 250288 83913871 ~ 83917114 (-)
stl3 stl3 coding downstream 262136 83888444 ~ 83905266 (-)
LOC110528625 LOC106583755 coding downstream 431905 83731185 ~ 83735497 (-)
LOC118965325 NA coding downstream 606984 83559538 ~ 83560418 (-)
LOC118965369 NA coding downstream 1110970 83056001 ~ 83056432 (-)
LOC110529055 rnf123 coding upstream 672944 84844331 ~ 85106696 (-)
LOC110528641 terf2ip coding upstream 935584 85106971 ~ 85119900 (-)
LOC110528639 LOC106583772 coding upstream 969837 85141224 ~ 85169972 (-)
gmppb gmppb coding upstream 999731 85171118 ~ 85184654 (-)
LOC110529054 ip6k1 coding upstream 1029772 85201159 ~ 85271192 (-)
G657812 NA non-coding downstream 104178 84056270 ~ 84063224 (-)
G657727 NA non-coding downstream 215320 83951395 ~ 83952082 (-)
G657751 NA non-coding downstream 223857 83943345 ~ 83943545 (-)
G657662 NA non-coding downstream 364658 83800228 ~ 83802744 (-)
G656809 NA non-coding downstream 373112 83794057 ~ 83794290 (-)
G657895 NA non-coding upstream 29198 84200585 ~ 84201832 (-)
G657938 NA non-coding upstream 93914 84265301 ~ 84266187 (-)
G657943 NA non-coding upstream 103598 84274985 ~ 84276918 (-)
G657949 NA non-coding upstream 112164 84283551 ~ 84285240 (-)
G657950 NA non-coding upstream 114956 84286343 ~ 84287334 (-)
LOC110528632 LOC105007334 other downstream 210634 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 551404 83608532 ~ 83615998 (-)
G656314 NA other downstream 839222 83327479 ~ 83328180 (-)
G655715 LOC106583745 other downstream 1834104 82328398 ~ 82333651 (-)
G655651 NA other downstream 1940857 82225952 ~ 82226545 (-)
G658255 NA other upstream 835339 85006726 ~ 85007505 (-)
G659250 NA other upstream 1988855 86160242 ~ 86160923 (-)
G659543 NA other upstream 2461020 86632407 ~ 86633856 (-)
G659824 NA other upstream 2832349 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 3113514 87114104 ~ 87293966 (-)

Expression


Co-expression Network