XLOC_025650 (zfand2a)


Basic Information

Item Value
gene id XLOC_025650
gene name zfand2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43373867 ~ 43397134 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050498
ACCCAGCGATGACATCTCAAAAAACAGCAGACGACTACAAAAGCCAAAACACAGAAGCTGAGCTTGTTCGAAGCCAAAAGCTTTAGTTTACTATTCAAGGTGGGACCAAGAAAAAGTGGATTTGCTCACTATCTCGTCCAGCAGCGGGGTGCGTTTCACCACTGTGCCATGGAGTTTCCAGATCTCGGGGAGCACTGCTCGGAGAAGAGCTGCAAACGACTCGATTTCCTTCCAATGAAATGTGATGCCTGTGAAGAGATTTTCTGCAAAGACCACATAACTTATGCAAATCACAAGTGCACTTCATCATATAAGAAGgaCGTCCAGGTTCCTGTATGTCCATTGTGCAACATCCCCATTCCCATCcgaagaggagaaatgccagatATCAAAGTCGGCGAGCACATAGACAGAGACTGCAAATCTGACCCTGCCCAGAGGAAACGAAAGATCTTTACTAATAAATGCTCGAAGGGCGGCTGTAAGCAGAAGGAAATGATCCGGGTGACGTGTGACCAGTGCCACCTAAACTACTGTCTCAAACACAGGCATCCACTCGACCATGACTGTAAGACTGACAACAAGCCGGTCTCCAAATCAGGgcATGCAGCTTTAATGAGGGCTCAGGGCTCTTCTTCCAGTAACACAGCAGCTTCATCCACTAGAGGGAGCTCTAGGAACATGTCTAATGGAGTCACTGGAAACGCCAGACCTCAGAGCAGTAGTGCACCAAGGACAAATACTGCACCTCCACCCATGGTGTCTCCCACAGCACAGAATGTAATTCCCCCATCAGTGTCCTATCAAGCTGGGCTGACGGAGGAGCAGGCCCTCCAGAGAGCTTTAGAAATATCACTGGCTGAATCTGCTCGAGCAAGCCAGCCTACTCTAAGCCCTCAGGAGCAGGAGGATCTGGCCTTGGCTCAGGCTCTCGCTGCTAGTGAAGAAGAATACAGGCGACAGCAGCAGAGACAACAGGGAGGAGTTTCCAAACAGTCCAGCTGCCGCCTTTCGTAATGTGAGGTGTCGCTGACCAACTTTAATCTGCCTCAATCTGCACACAAGCACCAGTAATGTATCCGTGAGCTGCACAGTCCAGAATATAAAGCTTCTTCCTCCTGAAGGCTGTTATGTTGTCTTCGTTCTTCTGTTTTGCGTCATTCTGTAGTGCTTTTTAGATGGGCAATTCTGCCATTTCGGCAAGTGGTGCTTCATGTACATATTTTATATAGCTATCATGTTAATCTGTCAATCAATGTAGATGTTTttggaaataaattattttaaagtgttatttcacACTCTGCTTTTATTGATCACACTTTCAACTAGAGCTACTGATATCTTCCATTTCAATTGTGATAGCGCAGATCAAAGCCCTACAACTCTGTAAAACTTTATGAAACATTATGAAATATCAGagaaatgcatttatatttattgcacCTGCAATTGTTCTTTCAAAGAGCTATTTCTACCTGATTTACTCAATAAAATAACTATGAATTTAGACTGA
>TCONS_00050499
AGACGACTACAAAAGCCAAAACACAGAAGCTGAGCTTGTTCGAAGCCAAAAGCTTTAGTTTACTATTCAAGGTGGGACCAAGAAAAAGTGGATTTGCTCACTATCTCGATTTCCTTCCAATGAAATGTGATGCCTGTGAAGAGATTTTCTGCAAAGACCACATAACTTATGCAAATCACAAGTGCACTTCATCATATAAGAAGgaCGTCCAGGTTCCTGTATGTCCATTGTGCAACATCCCCATTCCCATCcgaagaggagaaatgccagatATCAAAGTCGGCGAGCACATAGACAGAGACTGCAAATCTGACCCTGCCCAGAGGAAACGAAAGATCTTTACTAATAAATGCTCGAAGGGCGGCTGTAAGCAGAAGGAAATGATCCGGGTGACGTGTGACCAGTGCCACCTAAACTACTGTCTCAAACACAGGCATCCACTCGACCATGACTGTAAGACTGACAACAAGCCGGTCTCCAAATCAGGgcATGCAGCTTTAATGAGGGCTCAGGGCTCTTCTTCCAGTAACACAGCAGCTTCATCCACTAGAGGGAGCTCTAGGAACATGTCTAATGGAGTCACTGGAAACGCCAGACCTCAGAGCAGTAGTGCACCAAGGACAAATACTGCACCTCCACCCATGGTGTCTCCCACAGCACAGAATGTAATTCCCCCATCAGTGTCCTATCAAGCTGGGCTG
>TCONS_00050500
CAGAAGCTGAGCTTGTTCGAAGCCAAAAGCTTTAGTTTACTATTCAAGGTGGGACCAAGAAAAAGTGGATTTGCTCACTATCTCGTCCAGCAGCGGGGTGCGTTTCACCACTGTGCCATGGAGTTTCCAGATCTCGGGGAGCACTGCTCGGAGAAGAGCTGCAAACGACTCGATTTCCTTCCAATGAAATGTGATGCCTGTGAAGAGATTTTCTGCAAAGACCACATAACTTATGCAAATCACAAGTGCACTTCATCATATAAGAAGGTTCCTGTATGTCCATTGTGCAACATCCCCATTCCCATCcgaagaggagaaatgccagatATCAAAGTCGGCGAGCACATAGACAGAGACTGCAAATCTGACCCTGCCCAGAGGAAACGAAAGATCTTTACTAATAAATGCTCGAAGGGCGGCTGTAAGCAGAAGGAAATGATCCGGGTGACGTGTGACCAGTGCCACCTAAACTACTGTCTCAAACACAGGCATCCACTCGACCATGACTGTAAGACTGACAACAAGCCGGTCTCCAAATCAGGgcATGCAGCTTTAATGAGGGCTCAGGGCTCTTCTTCCAGTAACACAGCAGCTTCATCCACTAGAGGGAGCTCTAGGAACATGTCTAATGGAGTCACTGGAAACGCCAGACCTCAGAGCAGTA
>TCONS_00050501
TCCAGCAGCGGGGTGCGTTTCACCACTGTGCCATGGAGTTTCCAGATCTCGGGGAGCACTGCTCGGAGAAGAGCTGCAAACGACTCGATTTCCTTCCAATGAAATGTGATGCCTGTGAAGAGATTTTCTGCAAAGACCACATAACTTATGCAAATCACAAGTGCACTTCATCATATAAGAAGgaCGTCCAGGTTCCTGTATGTCCATTGTGCAACATCCCCATTCCCATCcgaagaggagaaatgccagatATCAAAGTCGGCGAGCACATAGACAGAGACTGCAAATCTGACCCTGCCCAGAGGAAACGAAAGATCTTTACTAATAAATGCTCGAAGGGCGGCTGTAAGCAGAAGGAAATGATCCGGGTGACGTGTGACCAGTGCCACCTAAACTACTGTCTCAAACACAGGCATCCACTCGACCATGACTGTAAGACTGACAACAAGCCGGTCTCCAAATCAGGgcATGCAGCTTTAATGAGGGCTCAGGGCTCTTCTTCCAGTAACACAGCAGCTTCATCCACTAGAGGGAGCTCTAGGAACATGTCTAATGGAGTCACTGGAAACGCCAGACCTCAGAGCAGTAGTGCACCAAGGACAAATACTGCACCTCCACCCATGGTGTCTCCCACAGCACAGAATGTAATTCCCCCATCAGTGTCCTATCAAGCTGGGCTGACGGAGGAGCAGGCCCTCCAGAGAGCTTTAGAAATATCACTGGCTGAATCTGCTCGAGCAAGCCAGCCTACTCTAAGCCCTCAGGAGCAGGAGGATCTGGCCTTGGCTCAGGCTCTCGCTGCTAGTGAAGAAGAATACAGGCGACAGCAGCAGAGACAACAGGGAGGAGTTTCCAAACAGTCCAGCTGCCGCCTTTCGTAATGTGAGGTGTCGCTGACCAACTTTAATCTGCCTCAATCTGCACACAAGCACCAGTAATGTATCCGTGAGCTGCACAGTCCAGAATATAAAGCTTCTTCCTCCTGAAGGCTGTTATGTTGTCTTCGTTCTTCTGTTTTGCGTCATTCTGTAGTGCTTTTTAGATGGGCAATTCTGCCATTTCGGCAAGTGGTGCTTCATGTACATATTTTATATAGCTATCATGTTAATCTGTCAATCAATGTAGATGTTTttggaaataaattattttaaagtgttatttcacACTCTGCTTTTATTGATCACACTTTCAACTAGAGCTACTGATATCTTCCATTTCAATTGTGATAGCGCAGATCAAAGCCCTACAACTCTGTAAAACTTTATGAAACATTATGAAATATCAGagaaatgcatttatatttattgcacCTGCAATTGTTCTTTCAAAGAGCTATTTCTACCTGATTTACTCAATAAAATAACTATGAATTTAGACTGATTCAGGGATGTTCATATTCTTGACTTGAATAACACTAGTTATTATACTGTAAATGTTACCGTTTTTATCTTACtgtgtgtcattgtgtgtgtctgtcctgAAGAATTATGGAACATAAGAAGCATTAAATTAATTACACTGTTTTTAACTTTTAGAAATCACTGTAGTTacttataacaataataataataataataataataataataataattacttgcaTTTATGTAGTGCTATTCTaaacactcaaagcgctttacacattttggggggaatctcctcatccaccaccagtgtgcagcatttacCTGGAAGACACgtcggcagccatattgcaccagaccacacaccagctaattggtggagaggagactgaGTAATGAAACCAattatatggggatggttaggaagccattatggacagaggccagtgggcaaatttgaatAGGATACTGGgattaaacccctacttttttcgTAGAACATCATGGGATTTTTATCAACCACAGCGAGTCAGGACCttagtttaatgtctcatctgaaagaggTCACTCACTGAGCAgaatagagtccccatcaatatactggggtttaggacccacacagaccgcaggaaAGAGgcgattcatttttattttgactggcaattctttttttttttttttcttctgaaaaagacGATGTACAGTTCTTATAAGTTAATTTCACATGTACACAGTGATATGATTCGAGTGTATACTGTGTGAGCGCATAGATAAATATATGCCTATCGTAAATAAATAATGGCTTTGCATCAAATGATATTTACTTAAACAGTGATAGTATTTGACAATAAATATTGCTGAAATGACCCTGTCCAGCTTTAAGAAAAATGAACCAAATAATTAGGCAACAAAAGTCATAATAAACAATACCAAGGTTTATCAGACAACTagataaaaatttataataagcTGAAGCTGTTTCCCAAACTTGTTCTCGGAGGCAAAGCAACAACCCATTTTCACACTCTTTCTAATTAAACAGCCTATTAAATGCATCAGCTTATTGGCCGAGAGTCCAGGAATATGAAATGCCTGAAATTAATAAATGGGTTAGACAAATGAGACATTGTGCACTGTTGGGGAGTCCCCAAGAAACAGGGAAACGAATGGATGGATTCATTCAAATGGCAAGCATCAACCTCTGAAGGGCACTTCAGACAGAGTAAAAACAATCATGGCCCCGATACTTAAGTCTCGCTCCAAACCAAAGTTCAAAAATATGAGGGTAAACCCTTTAAGATTTGGGCATACAGATTCTCCCTCCCAGAGCAGTAAGAGGagattttcttttcctttcctttttagatgtatacagtatgtgtaaatacatttaaagggatagttcacccaaaaattaaaattctgtcattgcaTACCCATTCTTGTTgttaaccaattttttttttttttttttttttttttaattattattctgttgaatacaaagatATATAAGAttattggaaacctgtaatcatcaACATACATTGAACAACCCCAGTATGGAACGcgtgtattcaattcaattcacctttatttctatagcgcttgtACAAtttagattgtcaaagcagcttcacatggaagatcatagtaaattgaaacagtgtcagtccagttttcagagtttaagttcagttcagtttagctcagttcagtgtggttgatAATCACCACTGAGAGTCCAAATTctgaagagcaatccatcgatgcgcagctctacagatcctgaaccatgcaagccagtggcaagagcggagaggaaaaaaacttcaccaactggCAAAAGTTAAGAATTAAAAAACCccagagagaaaccaggctcagttgtgcACGACCgaggccaaacgtcttgtgcagagctgcagtctaggagaACGCTGggcctcagcaaagactcgtctgtccctggagcgccacaggaatcagtctcatgctctccactcctccatgaccaccacagcagctgctcaggatacggcctagtccaggattatggaaaccttaggatcatctcgtcgctggtcttggatcgaatcagtggcgctgcatagtctgagaGCCTCGGGGTGAGTATACcctggtggaaatagagaataaagagaataattagagtagctgctgttcatattgTATAAAAACAAGATGCTGACACCTGTGTAGAGCACATTCATTtatcataccgctaagtgatgcactgtgtatgctttactaaaaagatagctctttaatttagttttgaactatgagagtgtgtctgagcctctgacgttatcaggaaggctattccagagtttaggagccataagtGAAacggctcaacctcctttactcggctttgctattctaggtactaccagaagccctgagttttgagatcttaaagagtgagttggattgtagcaagacagaaggttggttagataaacaggagctagattatttagagctttataggtaagaagcaatattttaaattcaattaacaggcagccagtgtgagGGTGATAAAATTGggctgatatgatcatattttcttaacctggtcagaactctggctgctgcattttgtactagctgaagtttgttaatagaggatgctgggtaGCCAGCAAACAGATCATAACAGTTAttcagcctagaagtcataaaagcatggactagcttttctgcatctgagatggatccCAGGGGTAGCACGTATATTGTagacagcaaagggcctaaaactgatccttgaggcaccccatactttactgggctgacttgtgaaggctgtccattaatattcacaaactggtaacggtcagctaagtatgacttaaaccattgtagagcctgtccctgggcacctgtagactttaagcgatttatgaggatactGTGGTCGATGGTGTCAAATGCCATACTAAGATCCAGTAAAACTAATAGCACCCTTGCTCAGCAGCTAAGAGTacatcattggttattttcactaatgcggtttctgtgctgtgatgagccctgaaacctgactgaaacaccaAAAacattgttcgtctgcagaaaggagcataattggGCAGAAaaaactttttctagtattttagacataaatggaagatttgaaataggcctatagttagctaagttgctGGGGTCCATTTgcagtttcttaataataggcttaataacagctagcttgtaagagtttggaacatggcctaaagataaagaagagttgataacattaagaagaggttctcctacaGCAGGTAGCAATTccttcagtaattttgttggaattgggtCCAACATACacatagctggtttagagctatttataactTTCTCTAGCTCTttctgttctatgattttgaagcactgtagGTTATTTTGATTCAGTGGAATGTTTACTGGATCTGATGTATAAGGCGGTGCAGAAAGTTTAACGTCTTCTATTTTTATCTAAAGCCTTCTGTGttatcactgaaaaaattaatgaaatcaTCACTACAAATTTGCGGTTGTTCCAAAGTTGAcagattatttgttaatttaacaaTGTTGTTAAAGAAAAATCTAGGATTGTATGATTATTTTATAACAGTTTGCAGAGGTGCTTagccctggcagattttagagctcTCCTGACTATCTTTGAACGCAATTCTAAAGacatctaaatgttttttttttttttcaatttatgttCCAGGgcacgggttgctgttttgagagggcgagtatgactattatgatgggtgccacagtatttagtgtgctagcaAATATGGCAttcatactgctggttactacaagGTCATTTGCCTTTGCATGTGCATTTCGAAGTAGAGA

Function

symbol description
zfand2a Predicted to enable zinc ion binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein targeting to ER. Predicted to be active in endoplasmic reticulum. Orthologous to several human genes including ZFAND2B (zinc finger AN1-type containing 2B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1596 Predicted to enable zinc ion binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein targeting to ER. Predicted to be active in endoplasmic reticulum. Orthologous to several human genes including ZFAND2B (zinc finger AN1-type containing 2B).

Ensembl:

ensembl_id ENSDARG00000103511

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050498 False 1516 mRNA 0.45 10 43373867 43393253
TCONS_00050499 False 701 processed_transcript 0.47 6 43373895 43384178
TCONS_00050500 False 664 mRNA 0.48 6 43373918 43380808
TCONS_00050501 True 5261 mRNA 0.40 9 43374571 43397134

Neighbor

gene id symbol gene type direction distance location
XLOC_025649 NA coding upstream 45108 43200317 ~ 43328759 (+)
XLOC_025648 NA coding upstream 238374 43102010 ~ 43135493 (+)
XLOC_025647 si:dkey-43p13.5 coding upstream 281605 43086548 ~ 43092262 (+)
XLOC_025646 ints1 coding upstream 312896 42999277 ~ 43060971 (+)
XLOC_025645 tmem184a coding upstream 416258 42923275 ~ 42957609 (+)
XLOC_025651 galr2b coding downstream 63562 43460696 ~ 43479049 (+)
XLOC_025652 CU138533.2 coding downstream 252907 43650041 ~ 43653791 (+)
XLOC_025653 NA coding downstream 288530 43685664 ~ 43687657 (+)
XLOC_025654 NA coding downstream 313933 43711067 ~ 43755843 (+)
XLOC_025655 dre-mir-193b coding downstream 317565 43714699 ~ 43714783 (+)
XLOC_025429 BX649540.1 misc upstream 13124831 30248739 ~ 30249036 (+)
XLOC_025643 NA non-coding upstream 618699 42754657 ~ 42755168 (+)
XLOC_025642 NA non-coding upstream 864037 42507482 ~ 42509830 (+)
XLOC_025640 NA non-coding upstream 876101 42490459 ~ 42497766 (+)
XLOC_025656 dre-mir-365-1 non-coding downstream 319693 43716827 ~ 43716915 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_02248205_02252489 ZFAND2A coding CI01000046 null 2247963 ~ 2252489 (-)