Gene
RNA
| Item | Value |
|---|---|
| gene id | G658356 |
| gene name | LOC100286442 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 85283076 ~ 85283378 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Vacuolar protein sorting-associated protein 52 homolog |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU748443 | True | 303 | lncRNA | 0.30 | 1 | 85283076 | 85283378 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110529054 | ip6k1 | coding | downstream | 11886 | 85201159 ~ 85271192 (-) |
| gmppb | gmppb | coding | downstream | 98422 | 85171118 ~ 85184654 (-) |
| LOC110528639 | LOC106583772 | coding | downstream | 113104 | 85141224 ~ 85169972 (-) |
| LOC110528641 | terf2ip | coding | downstream | 163176 | 85106971 ~ 85119900 (-) |
| LOC110529055 | rnf123 | coding | downstream | 176380 | 84844331 ~ 85106696 (-) |
| ube2j2 | ube2j2 | coding | upstream | 92216 | 85375594 ~ 85388068 (-) |
| LOC110511195 | LOC106583764 | coding | upstream | 109477 | 85392855 ~ 85551720 (-) |
| LOC118965326 | NA | coding | upstream | 274529 | 85557907 ~ 85558332 (-) |
| atg7 | atg7 | coding | upstream | 481260 | 85764638 ~ 85855852 (-) |
| hrh1 | hrh1 | coding | upstream | 573311 | 85856689 ~ 85864549 (-) |
| G658355 | NA | non-coding | downstream | 377 | 85282419 ~ 85282699 (-) |
| G658341 | NA | non-coding | downstream | 51584 | 85230332 ~ 85231492 (-) |
| G658331 | NA | non-coding | downstream | 74152 | 85207757 ~ 85208924 (-) |
| G658299 | NA | non-coding | downstream | 167965 | 85114021 ~ 85115111 (-) |
| G658606 | NA | non-coding | upstream | 692 | 85284070 ~ 85284280 (-) |
| G658610 | NA | non-coding | upstream | 10469 | 85293847 ~ 85294166 (-) |
| G658611 | NA | non-coding | upstream | 11143 | 85294521 ~ 85295768 (-) |
| G658612 | NA | non-coding | upstream | 12423 | 85295801 ~ 85331017 (-) |
| G658624 | NA | non-coding | upstream | 20801 | 85304179 ~ 85305180 (-) |
| G658255 | NA | other | downstream | 275571 | 85006726 ~ 85007505 (-) |
| LOC110528632 | LOC105007334 | other | downstream | 1326308 | 83954195 ~ 84332909 (-) |
| G656671 | dag1 | other | downstream | 1667078 | 83608532 ~ 83615998 (-) |
| G656314 | NA | other | downstream | 1954896 | 83327479 ~ 83328180 (-) |
| G655715 | LOC106583745 | other | downstream | 2949778 | 82328398 ~ 82333651 (-) |
| G659250 | NA | other | upstream | 876864 | 86160242 ~ 86160923 (-) |
| G659543 | NA | other | upstream | 1349029 | 86632407 ~ 86633856 (-) |
| G659824 | NA | other | upstream | 1720358 | 87003736 ~ 87007292 (-) |
| LOC110528667 | cenpp | other | upstream | 2001523 | 87114104 ~ 87293966 (-) |
| LOC110528687 | LOC106583825 | other | upstream | 2969685 | 88253063 ~ 88345745 (-) |
