XLOC_025657 (zc3h7a)


Basic Information

Item Value
gene id XLOC_025657
gene name zc3h7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 43774369 ~ 43808322 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050508
ACGTTGCCCAAAGAAGAGACAGGATTGAcgaacacatgaaaacattagCTATTGTATGGAGCGCTTTCATTCCTGTTGACTACTGATCTACTtcagGCATTAAACACAGTCAAGTCCTACACGCTCGCATGGGAAGATGTCAGCCACAGGCCAGGACCGAAGCAGCCGGTGGCAGGACATTCAGAAAGGACTGCAGTTCATTCAATCAACCCTGCCTTTTCCTGGCTCGCAGGAGCAGTATGAGGTGTTCATTCAGAATTTAGTGAGAAATCTGTTTGGTGAGGGAAACGACGTGTTCCATGAAGGCGAATGGGCACGAGCTGTTAATTTATACACAGAGGCCTTAAACATATCCGAGTATGCAGACTCAGAGGACATCCTCATCGCTCAAGATCTGAATGAGAAGCTTCATGCGAACCGTGCCGCTTCCTACTTGAACATTGAGCTGCACGATCAAGCTCTAGAGGACTGTGAAAAAGCTCTTCAGCTCAATGAGAGCAACTACAGAGCACTTTACCGCAAGGCTCGTTGCCTAAAAGAAATAGGGAGACTTCAGGAGGCTTACGAGGCAGTTGCTAAATGCTCAATGGCAGTGCCTCAGGATACTCGTGTGATTGAATTGACCCAGGAGCTTGCCAAAATGTTGGGATTAAAAATCCGTAAGGCTTATGTGAGAAGCAAGCCTGCCTTAAATGTTTTGCCTGGGTCAGGTATATCAGGAGCTGTTAATGATAAGCATTCACAAAGCTCTTCCTCTGTGGATGATATTGAATGTGAAGTGGGCCAGTATATTCATGGTATGAGCGGCCCACTACCCGTCAGCATGCCAGTGTCTTCAGCTGTAAGTGAGAAGGAAGAAGTAGAGTCCAAGCCTCTGGTTGGTCTCATTTCACCACCAGTCATCCCAATAGAGACACATAAACCAGAGCCTGTTCCCATGCCTTTACATATGCCATTGGTCAATGGAACCAGGCCCAATGACTCTTATGCAGTACAAAATACTCACTTGGACTTTGATACCGATATTATTGGGGATGATCTGGATGAACTATTGGACCGAGCAAGTCCTCCTGAGGCTAATTTGGATATTCCCACAGTTGACGGACCTATTCCTTTACCTACCAGTATTTCTGTCAGTAGTTCAATACAGAGTCCTTTGCTCATGCCTTCTCATCTGAGCCATCCATTTTTGGGCATGGATTCGCACTGCACAGTAAATTTACCTGCACCGTATCACAAACCAATTTCATCGTATTCTCTTGGTCTGGACACATTTTCTTCACCACTGGATTCGTTGGATAGTTTGTCACTCTCAGAGACTCAGACagATAAAGCTTTTAGCCAGCATCATTTTCTATCGATGAGCAATAGCGACATGTCAGTGCCAACCATTCCACCCATCGGCATGGGTTACTGCACATCTGATGGGACGTACGCCCAGGAATATCCACCGCAGCTAGACCTCGCTAAGAACCCACTTGCTGATACCCATGATTTTAAACAAGCCTGTTCTTCATGCTACATTAAAACCGGCCCGGGTGTGCTGGATTACGCTTACCTTCCAGAGGACCACAAATGCAAAAAAGATTTGCTTTTGGGAAGAACCAAACATGTGGAACTTCAGACGTGGAAACTTATTCGGCCTAGACCTAAAAACCAGTACATGGGGCCTTATTATATTTGCAAAGATGTGGCGATAGGACAGGAATGCCGGTATCTTGGCCACTGTACCTTTGCTTATTGCCAAGAGGAAATTGATGTGTGGATGCTTGAGCGCAAAGGCTTCATCTGCCGGGACAGTCTGTGCGATCCTTATGGATCTAGACCTAAGATTAATTTGACTGTGGCCAAAATCCTACAGGAGCATCATGGGATATTTCTGTTCCTCTGTGAGGTGTGCTTTGATCACAAGCCTAGAATAATCAGCAAAACCAATAAGGACAACCCCAGCCTATGCTCTCACCCAGTGACAAAGCATGCGTTTGAGGAAAAGAAGTGCCTTGTACACTATATAAGGGATAAAACGGTCAGGTATTCCAAAATTCGTCCATACAACCCTTTTTGCCAGATGGATCTGTGTCGGCATGAGGTGCGATACGGTTGTCAGCGAGAGGATTCCTGCTTTTATGCCCACAGCCTCATTGAGCTCAAAGTGTGGATGATGAAGAGTGAACAAGGCATTTCACATGAAGGTATTGTTCTGGAGTCGCAGAGATATTGGAATATGAATGCTGCTGTTTATTCACAGGAGTTTGCACCTACCATGCGCAGGTTTGGCCCAGTCAATCTGAAGATGCAGTTTGTATGTGCTCAGTGTTGGAGGAACGGTCAAGTCAGCGAGCCGGACAAAAACAAGAAGTACTGCAGTGCCAAGGCCAGACATCCCTGGTCTAAAGACAGACGAGTGGTTCTGGTTAGCTCTGTTGAAAGGAAAAAGTGGACAACAGTTCGAGCTCTCCCATCCAAAAAACCTGTTCCTGCTCAATTTGACatttgcatGCATGTTTCGGCTGGAAAAAAGTGTCAGTACATTGGAAACTGCACATTTGCACACAGCACAGAGGAAAGAGATCTATGGACCTTCATGAAAGACAACAATaTTGCAGACATGGAGCAGCTGTATGAAATGTGGCTGCAGTCTCAGAAGCCGGGCTGGGGTGAAGAGAGCAGCAACATCGCCACCCGAGAAAATGGCAAACAGATTCACATGCCCACAGACTACGCCGAGGAAGTGGCTGGTAATCATTGTTGGCTGTGTGGGAAGAACTGCAACAGTGAAAAGCAGTGGCAGCAGCATATCACCTCTGAGAAGCACAAAGAGCGGGTTTTCAACTCTGAGGATGATCAGAACTGCTGGCAGTATCGTTTTCCAACCGGCACCTTTAGAGTCTGTGAGAGGTTCCTGAAGGGCACGTGCACCGAGGAGGAGCTCTGTAAACTAGCTCACGGAGACGAGGAGCTAAAAGAGTGGATGGACCGAAGAGAATTCCTTTTGATGAAACTTGCCAAAGCCAGAAAAGATCACTTGATAGCACCCAATGATAATGACTTTGGCAAATATAGTTTTCTGCTTAAAGATATTAAGTAATGTTTTAACTAAACCCAGTCTGTTAATGCGAGGTGTTCTGGATCTATGATATCTTGAGTTCAGTATTGAATCAGACGAGCGCCATTGTGTGGCTCTCTCTGATAAAAGAgggaggaaaataaaataaaatttctccTTCTGGGTTTTGATGGGAAGCGCAGAGCTGGCCTTGTGTTCTGAAGTAAATCACGGCTTTGTTGCTTTTATCACCGGTTACATATAAACGCACCATCGCCTTTTATGTTtctcttattaaaataaatgacactCGGCAGGAACTGGATTTTGTAAACCAAACCAAAAGCAGAAGTGCAGTATATATCTGGAATATAGCGAGAGGAAAAGCCCTGTTTGGATGTTTATGTGACAAATTCCCGCCCTTTTTTAGTTCGTTTGTTTTGGAATGCTGGGTCCTGTGTCTGTTATTCTACATTCGCGCCAAAACTGGCTGCTGTGTTAATGCCTGTTGGTATTATTTTATGGACCGACAAAAAACACGAAGTCTTCACCCTTTCAGCGTTCGTAGTTCCCTTAAGTAAAACATGGAAGTGATGCCGTTTACCGGTGTATTGAAGCAAACAGGAAAGAGGTAGGTGAATTTATTTTGTGACGACCTGTTTTATCCACTAGGGGGAGATAAGGACTCGACTGAGAGTCTTATCTGAAATAAATGCTGTTTGGGAGGAATCTGCTCTGCATTCCCTGTTAAAAGAATTTCATTTACTTGGATTAACTGCTTGTTTTTGATCTAATGAGAATGCTatatgctagtttttttttttttaatcgtcaCTTTTTATTGAGCATGAATGCTTTACATTGTTCTTTTTGATCATTATGTTGGTCAAAAATGACAGTAAAGACGTTTgtaatgttagttttttttaataaatgcttttcttttaaacta

Function

symbol description
zc3h7a Predicted to enable miRNA binding activity. Predicted to be involved in production of miRNAs involved in gene silencing by miRNA. Orthologous to human ZC3H7A (zinc finger CCCH-type containing 7A).

GO:

id name namespace
GO:0035196 production of miRNAs involved in gene silencing by miRNA biological_process
GO:0046872 metal ion binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2776 Predicted to enable miRNA binding activity. Predicted to be involved in production of miRNAs involved in gene silencing by miRNA. Orthologous to human ZC3H7A (zinc finger CCCH-type containing 7A).

Ensembl:

ensembl_id ENSDARG00000102195

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050508 True 3998 mRNA 0.44 23 43774369 43808322
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_025654 NA coding upstream 18526 43711067 ~ 43755843 (+)
XLOC_025656 dre-mir-365-1 coding upstream 57454 43716827 ~ 43716915 (+)
XLOC_025655 dre-mir-193b coding upstream 59586 43714699 ~ 43714783 (+)
XLOC_025653 NA coding upstream 86712 43685664 ~ 43687657 (+)
XLOC_025652 CU138533.2 coding upstream 120578 43650041 ~ 43653791 (+)
XLOC_025658 litaf coding downstream 17463 43825785 ~ 43831030 (+)
XLOC_025659 BX571715.1 coding downstream 147542 43955864 ~ 43987286 (+)
XLOC_025660 NA coding downstream 191971 44000293 ~ 44053770 (+)
XLOC_025661 nsmce1 coding downstream 254254 44062576 ~ 44077690 (+)
XLOC_025662 CR385066.1 coding downstream 1079715 44888037 ~ 44888153 (+)
XLOC_025429 BX649540.1 misc upstream 13525333 30248739 ~ 30249036 (+)
XLOC_025664 NA non-coding downstream 1437715 45246037 ~ 45253532 (+)
XLOC_025667 CR392042.1 non-coding downstream 1794023 45602345 ~ 45606457 (+)
XLOC_025668 dre-mir-2195 non-coding downstream 1826755 45635077 ~ 45635186 (+)

Expression

Expression of XLOC_025657(zc3h7a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Expression of XLOC_025657(zc3h7a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G195981 NA non-coding CI01000046 null 2056070 ~ 2057016 (+)