Fish Transcriptome and Expression Database

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model fish

XLOC_025662 (CR385066.1)

Basic Information

Item	Value
gene id	XLOC_025662
gene name	CR385066.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007114.7
NCBI id	CM002887.2
chromosome length	62628489
location	44888037 ~ 44888153 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050515
GGCCACAGCCagatcaccctgcagcccaaaacCAGCCCGAGACCTTACTGTAGATAAGCAGGATTGAGCCTGGTCtgggatgggagaccacatggaaaaacaagattgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109060

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00050515	True	117	rRNA	0.53	1	44888037	44888153

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_025661	nsmce1	coding	upstream	810347	44062576 ~ 44077690 (+)
XLOC_025660	NA	coding	upstream	834267	44000293 ~ 44053770 (+)
XLOC_025659	BX571715.1	coding	upstream	900751	43955864 ~ 43987286 (+)
XLOC_025658	litaf	coding	upstream	1057007	43825785 ~ 43831030 (+)
XLOC_025657	zc3h7a	coding	upstream	1079715	43774369 ~ 43808322 (+)
XLOC_025663	hs3st2	coding	downstream	59202	44947355 ~ 45000645 (+)
XLOC_025664	NA	coding	downstream	357884	45246037 ~ 45253532 (+)
XLOC_025665	ube2ia	coding	downstream	476696	45364849 ~ 45373511 (+)
XLOC_025666	baiap3	coding	downstream	513319	45401472 ~ 45539853 (+)
XLOC_025667	CR392042.1	coding	downstream	714192	45602345 ~ 45606457 (+)
XLOC_025429	BX649540.1	misc	upstream	14639001	30248739 ~ 30249036 (+)
XLOC_025654	NA	non-coding	upstream	1132194	43711067 ~ 43755843 (+)
XLOC_025656	dre-mir-365-1	non-coding	upstream	1171122	43716827 ~ 43716915 (+)
XLOC_025655	dre-mir-193b	non-coding	upstream	1173254	43714699 ~ 43714783 (+)
XLOC_025653	NA	non-coding	upstream	1200380	43685664 ~ 43687657 (+)
XLOC_025668	dre-mir-2195	non-coding	downstream	746924	45635077 ~ 45635186 (+)
XLOC_025678	NA	non-coding	downstream	1656861	46545014 ~ 46545481 (+)
XLOC_025683	NA	non-coding	downstream	1910359	46798512 ~ 46803047 (+)

Expression

Co-expression Network