G659308


Basic Information

Item Value
gene id G659308
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86294173 ~ 86295944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU749717
AAGCAAAGCCTCTCCTAACTAAATGACTCAACTGTAATGTACAACGTAACTGTGAAGGGATACTTCTAGGGTATCTGAGAGACTGGGCGACATCCCTGAAGTAACAGAAGCAGAGGACAGTGACTCACGCCCAGTGGGAGAGGTAGGAGAAAGGGCATTGGACAAGGACACGTGACTGGGACTAGAAACATTGGTTACGTCCTGGTTCTGACTGGTGGTGGAGGACTGTCTCCGTAGCTGGCCCTGATAGGAGCTGCCGCTCTTGAACGTGTTCACCACATCGATCTGGAGGAGGAGAACACAAGACAGGCCGCTCatagacaggtcagacagacaggtcagacagacaggtcagacagacaggtcataCAGACAGGTCAGACAAACAGGTCAGACAAACAGGTCAGACAaacaggtcagacagacagacagacaggtcagacagacaggtcagacagacaggtcagacagacagacaggtcataCAGACAGGTCAGACAGGTTGACTGAGGCGGCATAGCACTCCCAGGGAACCTGTCGCTCTGACAGGTAGTTTTAGTGTATCACAGTGATAATGGTACTGCCTCAGAGTAATGGGCTTTGATCAGATGAAACCGAGGTGATGCCAACGCAGTGTAGGGCCCAATGTTTGACAGACAGGACATGGTAGtaggacagacggacagactaGGCTATGACAAAGCGCATCCCCTGGTCTTAGCCATGGGGAAGCTGTCTCTCTGACATGTACGTGATTGAGACCTCTTAGGGATCACAAAGATCCTTAAGTATCACAGTGATAACGGGACTGGCTCAGAGTAACGGGCGACAATCAGATAAACAGACAGGCCATGGTAGTAGGATAGACATGACGGCTATAGACGGCTAGGCTGGGATAGGAGGATCACCCACCCTGAGAACATTGTGTTTCTGCTATATAGGTACGTAAAGACCTTATCACAGTGAAGGTACTGGCCCAGAGTCATGGAGTCCAGTCGCGAGCAGATTGCGCCAAGGGGATGAAGAGTTTGGTTCAAACCCTCCAGACGTCAGTGTCTGGGAAGACAGTGTGCTGCGGTACTGGAGGAGCTTCAGCTGTGGTTCTACAGTAGgtttcaactccgaccctgtttctggagagagataccctcctgtaggttttaactccaaccctgttcctggagagataccctcctgtaggttttaactccaaccctgttcctggagagataccctcctgtaggttttaactccaaccctgttcctggagagataccctcctgtaggttttaactc

Function

NR:

description
plasma membrane calcium-transporting ATPase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU749717 True 1296 lncRNA 0.51 3 86294173 86295944

Neighbor

gene id symbol gene type direction distance location
LOC118965394 NA coding downstream 287117 86004625 ~ 86007056 (-)
hrh1 hrh1 coding downstream 429624 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 438321 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 735841 85557907 ~ 85558332 (-)
LOC110511195 LOC106583764 coding downstream 742453 85392855 ~ 85551720 (-)
slc6a1b slc6a1 coding upstream 221550 86517494 ~ 86549674 (-)
LOC110528661 dusp7 coding upstream 390328 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 418335 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 427824 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 648853 86944797 ~ 86966992 (-)
G659304 NA non-coding downstream 6684 86285433 ~ 86287489 (-)
G659291 LOC106566233 non-coding downstream 33427 86259885 ~ 86260746 (-)
G659164 NA non-coding downstream 36582 86256874 ~ 86257591 (-)
G659287 NA non-coding downstream 44995 86248092 ~ 86249178 (-)
G659274 NA non-coding downstream 68957 86224932 ~ 86225216 (-)
G659307 atp2b2 non-coding upstream 2403 86298347 ~ 86305528 (-)
G659327 NA non-coding upstream 45616 86341560 ~ 86342032 (-)
G659330 NA non-coding upstream 50851 86346795 ~ 86348080 (-)
G659332 NA non-coding upstream 55481 86351425 ~ 86352594 (-)
G659346 NA non-coding upstream 89427 86385371 ~ 86385962 (-)
G659250 NA other downstream 133250 86160242 ~ 86160923 (-)
G658255 NA other downstream 1286668 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2337405 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 2678175 83608532 ~ 83615998 (-)
G656314 NA other downstream 2965993 83327479 ~ 83328180 (-)
G659543 NA other upstream 336463 86632407 ~ 86633856 (-)
G659824 NA other upstream 707792 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 988957 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 1957119 88253063 ~ 88345745 (-)
G661128 NA other upstream 2463549 88759493 ~ 88759938 (-)

Expression


Co-expression Network