G659352


Basic Information

Item Value
gene id G659352
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86397563 ~ 86508406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU749834
gcgagagagacagacagagagagagagagagagagagacagagagagagagagagagagacagagagagagagacagacagacagacagacagacagacagacagacagacagagagagagagacagagagacagagagagagagagagagagagagagagagacagagagcgagcgagagagacagacagagagagagagaaacagagagagagagagagagacctaccgTATACCCAGCCGATACATATTGACTCGAAGATGGCCACAAACAGCAGACACATTCCGCTGGCCGCGTAGGAGTCAAACAGCTGGAACACGTACATTCCACCCTGTCAACATGATGAGCCCCAGGAAGAAGGAGCATATAGACAAGCCCAGGATGAGCATTTCTCGACGGTAGCCTCTCCTGAAAGTCTCTGGGTACATGTCTATTACCGCTGTCACCAGGctctctacacacacaaactacacaacacaacacaactcattcc
>TU749835
agagagacagagagagagagagagaaatagagagagagagagagagagagagagagacagagagcgagcgagagagacagacagagagagagagaaacagagagagagagagagagacctaccgTATACCCAGCCGATACATATTGACTCGAAGATGGCCACAAACAGCAGACACATTCCGCTGGCCGCGTAGGAGTCAAACAGCTGGAACACGTACATTCCACCCTGTCAACATGATGAGCCCCAGGAAGAAGGAGCATATAGACAAGCCCAGGATGAGCATTTCTCGACGGTAGCCTCTCCTGAAAGTCTCTGGGTACATGTCTATTACCGCTGTCACCAGGctctctacacacacaaactacacaacacaacacaactcattcc

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU749834 False 494 lncRNA 0.51 2 86397563 86398554
TU749835 True 387 lncRNA 0.50 3 86397563 86508406

Neighbor

gene id symbol gene type direction distance location
LOC118965394 NA coding downstream 390507 86004625 ~ 86007056 (-)
hrh1 hrh1 coding downstream 533014 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 541711 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 839231 85557907 ~ 85558332 (-)
LOC110511195 LOC106583764 coding downstream 845843 85392855 ~ 85551720 (-)
slc6a1b slc6a1 coding upstream 9088 86517494 ~ 86549674 (-)
LOC110528661 dusp7 coding upstream 177866 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 205873 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 215362 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 436391 86944797 ~ 86966992 (-)
G659346 NA non-coding downstream 11601 86385371 ~ 86385962 (-)
G659332 NA non-coding downstream 44969 86351425 ~ 86352594 (-)
G659330 NA non-coding downstream 49483 86346795 ~ 86348080 (-)
G659327 NA non-coding downstream 55531 86341560 ~ 86342032 (-)
G659307 atp2b2 non-coding downstream 92035 86298347 ~ 86305528 (-)
G659400 NA non-coding upstream 1447 86509853 ~ 86510166 (-)
G659249 NA non-coding upstream 5616 86514022 ~ 86540716 (-)
G659405 NA non-coding upstream 13027 86521433 ~ 86521835 (-)
G659412 NA non-coding upstream 37301 86545707 ~ 86546049 (-)
G659419 NA non-coding upstream 78183 86586589 ~ 86587058 (-)
G659250 NA other downstream 236640 86160242 ~ 86160923 (-)
G658255 NA other downstream 1390058 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2440795 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 2781565 83608532 ~ 83615998 (-)
G656314 NA other downstream 3069383 83327479 ~ 83328180 (-)
G659543 NA other upstream 124001 86632407 ~ 86633856 (-)
G659824 NA other upstream 495330 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 776495 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 1744657 88253063 ~ 88345745 (-)
G661128 NA other upstream 2251087 88759493 ~ 88759938 (-)

Expression


Co-expression Network