Gene
RNA
| Item | Value |
|---|---|
| gene id | G659348 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048571.1 |
| NCBI id | CM023225.2 |
| chromosome length | 90918291 |
| location | 86405133 ~ 86412968 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| TC1-like transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU749793 | False | 6595 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749794 | False | 6531 | lncRNA | 0.43 | 7 | 86405133 | 86412968 |
| TU749795 | False | 7101 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749802 | False | 6687 | lncRNA | 0.43 | 10 | 86405133 | 86412968 |
| TU749803 | False | 6510 | lncRNA | 0.43 | 10 | 86405133 | 86412968 |
| TU749805 | False | 6967 | lncRNA | 0.43 | 12 | 86405133 | 86412968 |
| TU749811 | False | 6322 | lncRNA | 0.43 | 14 | 86405133 | 86412968 |
| TU749813 | False | 6380 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749815 | False | 6607 | lncRNA | 0.43 | 11 | 86405133 | 86412968 |
| TU749817 | False | 6895 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749818 | False | 6304 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749819 | False | 6289 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749820 | False | 6350 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| TU749822 | False | 6294 | lncRNA | 0.43 | 12 | 86405133 | 86412968 |
| TU749827 | True | 6868 | lncRNA | 0.43 | 9 | 86405133 | 86412968 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118965394 | NA | coding | downstream | 398077 | 86004625 ~ 86007056 (-) |
| hrh1 | hrh1 | coding | downstream | 540584 | 85856689 ~ 85864549 (-) |
| atg7 | atg7 | coding | downstream | 549281 | 85764638 ~ 85855852 (-) |
| LOC118965326 | NA | coding | downstream | 846801 | 85557907 ~ 85558332 (-) |
| LOC110511195 | LOC106583764 | coding | downstream | 853413 | 85392855 ~ 85551720 (-) |
| slc6a1b | slc6a1 | coding | upstream | 104526 | 86517494 ~ 86549674 (-) |
| LOC110528661 | dusp7 | coding | upstream | 273304 | 86686272 ~ 86704088 (-) |
| LOC118965395 | NA | coding | upstream | 301311 | 86714279 ~ 86715176 (-) |
| poc1a | poc1a | coding | upstream | 310800 | 86723768 ~ 86820513 (-) |
| LOC110528663 | LOC106583798 | coding | upstream | 531829 | 86944797 ~ 86966992 (-) |
| G659346 | NA | non-coding | downstream | 19171 | 86385371 ~ 86385962 (-) |
| G659332 | NA | non-coding | downstream | 52539 | 86351425 ~ 86352594 (-) |
| G659330 | NA | non-coding | downstream | 57053 | 86346795 ~ 86348080 (-) |
| G659327 | NA | non-coding | downstream | 63101 | 86341560 ~ 86342032 (-) |
| G659307 | atp2b2 | non-coding | downstream | 99605 | 86298347 ~ 86305528 (-) |
| G659384 | NA | non-coding | upstream | 63872 | 86476840 ~ 86477584 (-) |
| G659385 | NA | non-coding | upstream | 68553 | 86481521 ~ 86482052 (-) |
| G659400 | NA | non-coding | upstream | 96885 | 86509853 ~ 86510166 (-) |
| G659249 | NA | non-coding | upstream | 101054 | 86514022 ~ 86540716 (-) |
| G659405 | NA | non-coding | upstream | 108465 | 86521433 ~ 86521835 (-) |
| G659250 | NA | other | downstream | 244210 | 86160242 ~ 86160923 (-) |
| G658255 | NA | other | downstream | 1397628 | 85006726 ~ 85007505 (-) |
| LOC110528632 | LOC105007334 | other | downstream | 2448365 | 83954195 ~ 84332909 (-) |
| G656671 | dag1 | other | downstream | 2789135 | 83608532 ~ 83615998 (-) |
| G656314 | NA | other | downstream | 3076953 | 83327479 ~ 83328180 (-) |
| G659543 | NA | other | upstream | 219439 | 86632407 ~ 86633856 (-) |
| G659824 | NA | other | upstream | 590768 | 87003736 ~ 87007292 (-) |
| LOC110528667 | cenpp | other | upstream | 871933 | 87114104 ~ 87293966 (-) |
| LOC110528687 | LOC106583825 | other | upstream | 1840095 | 88253063 ~ 88345745 (-) |
| G661128 | NA | other | upstream | 2346525 | 88759493 ~ 88759938 (-) |
