G659249


Basic Information

Item Value
gene id G659249
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86514022 ~ 86540716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU749627
CCAGCATTAGCCTACTGAGCAAATATAAAACTACATCTATAATATATAATGTCCAGCATTAGCCTACTGAGCAAATATACAACTACATATAGAATATATAATGCCCAGCATTAGCCTACTGAGCAAATATACAACTACATCTATAATATATAATGTCCAGCATTAGCCTACTGAGCAAATATACaactaaatatataatatataatgtccAGCATTAGCCTACTGAGCAAATAATATGAGAAAATCATAGAGGGACGGTAGCATATCCTTTCCACCATACCTATGGAACCTGATCTTTTGCCAAATTATTGGCCAAagaactgatctgattggtcaaaagatcaattagtgacaacatcaacaaaaaaaagatcagaattAAGAAAGGTAGATTAAGATCAGAATGAAGAAAGGTAAAGTAGATTAACTAGCCAGATCAGAATGAAGAAAGGTAGATTAACTAGCCAGATCAGAATGAAGAAAGGTAGATTAACTAGCCAGATCAGAATGAAGaaaggctatgttacaggacatgcATGATGTTATTGGCAACGGTTCTATTTCTTATGCAAAACAGTCTTTTCTGAAATTATTACCTAGAAAATTACTGTAATTTGAATTGTAATTTAAATTCGGAGGCCCAATATGATTCAACACTACTGTGCTAATTTAAGATATTTACTTAAATTAAtctattaaaaatacaattattgtAAAAAGGTTATATATAGATTATAATTCATATGTGtttgtatttaaaataaatatagaAAAAGGAATGGAATGTGTTACAGAAAGTAGTGAAATGAATGCAAAATTAAAGATGCATAGTGGAATTGAATATTGACCAATTATAAGCAATGACCATTATGGGATAGTGCAACCTGAAAAGGCCAAATCTCCATAATCTATGTATATAATATTATCACTGTTTTCCAAGATCCGGCCATTTTTACCACTATTTTACCCCTTTACTTATTTTCCTTTGAAAAGCACAAAGTTCCAGTGTGGATCTCAAAGCTTCCCATTCGGTATGACTATTACAAAATGCAGATTAACATTATCATACCAGAGACTGTTACAATTGTATCTTTGTTTTCTAAAGaacaataacttttttttttttaaagaatcatTTTGTAGGATGTGTTCTATGTAAGAGTGAGATGGACCAAAATCATACACATGTcaataataaaaaaacaagatTACCAACCTATTGACATGAGACATATATATCCCTCCCATCCCGTCAATCCAGATAACACAGTACTATAAGCATTATTATCACAGAAGTAGCATTTGAGCAGTGACTGCATGACAATTCCTTCTAACAATCCAGAGATACTGTTTAAACTTCAAACTTGTTTCCCACATTAGTCCAGACCTCAGGAACAGTCGTGAAAAGTGACCAAATTATCTGATGAAACTACAGAGATGATAGCCAGTCGTCTGTTGTTAGTCAATCATTCTAGTCCTAGTCTGACTGTGCAGGTTTCCTATGTCAGGTTCTGTAAGAGAAGTGTTATAGATGGACCACAACCTATCCTGGTCCGAAAACATAGGCCAATATTACTACTGAAATTATACttttctttttcattttttttgaaAGAGGAAACATTAATTATCAAGTTTTTtttcaataaataaatatatatatagtatcaATCAAAAATatgcacacacctactcattcaaaggtttttcttaattttttacattgtatattaatagtgaagacatcaaaactatgaagtaacacatatggaatcatgtagtaaccaaactgAGATGATTTGGGaggagttggaccacagagtgaaggaaaagaagccaacaagtgctcagcatatgtgggaacttcaagacgattggaaaatcattccaggtgaaactggttgagagaatgccaaggcgacttatatatttgtttaacacttttttggttactacatgattccatatgtgttatttcatagtttttctgccttcacttttattctacaatgtagaaaatagtaaaaataagaaaaacccttgaatgtgtagatTTGTCCAAACTGTTgattagtactgtatatatacatatacagtggggcaaatgcaaattaattagttAAAATTCATtcaatgtgatttcctggatttttgttttagattccgtctctcacaattgtagtgtacctatgataaaaaaaattacaaacctctacgtgctttgtaagtaggaaaacctgcaaaatcggcagtgtatcaaatacttgttctccccactgtgaaGACCgattagtactgtatatatacatatacatatatagatCGATTATATAGTAATCCAAACAAATTATCAAAGTTGTATTTCTATAAAGATTAAACTAGTTTGTTTCCATGGCAGCGACAAATGACAAGGATCTGGTTTAAATGAGTCATTTTAGTCACTGCAAAGAATATAAAACTAAAATGTGCAATGAATTAAGGTTCCCATTAATTTTGTATAAAGTTACCATACTGCAGTTTTCTGTCTTAAATGATGTTGTAAAACTCTACTGCGTTATACATGTAACTGTGAATGTCCAGATGAGTTTTTTTTTGTCTAAATGTTGAAAAAAATCTGCTATTATTTGCTGTTTTCTGCAATAATAGGATTATTTCAGAAACCTAAAGCACATATAtctcatattatattatatctttctgaaatgtaaaaaaaaaataatagatggcaataacaataatagtagAATAATTAAATCATAGATAGATACACTTGTCTAGTCAAAGAATCTTGTTTTGTATATTTCTACCAGTCTCATGGGCCTAATGTAAAATATTCTATGTACAATATATAATACATGGTGTTAGATGGTGTTATATGAAAAAAGCATGATTGCCATATATGTTATCTGCAGAAGTAAATAAAGAACTATAGATTATAACGTGTGCTTTCatcatgtatattttttttatggggg
>TU749630
CCAGCATTAGCCTACTGAGCAAATATAAAACTACATCTATAATATATAATGTCCAGCATTAGCCTACTGAGCAAATATACAACTACATATAGAATATATAATGCCCAGCATTAGCCTACTGAGCAAATATACAACTACATCTATAATATATAATGTCCAGCATTAGCCTACTGAGCAAATATACaactaaatatataatatataatgtccAGCATTAGCCTACTGAGCAAATAATATGAGAAAATCATAGAGGGACGGTAGCATATCCTTTCCACCATACCTATGGAACCTGATCTTTTGCCAAATTATTGGCCAAagaactgatctgattggtcaaaagatcaattagtgacaacatcaacaaaaaaaagatcagaattAAGAAAGGTAGATTAAGATCAGAATGAAGAAAGGTAAAGTAGATTAACTAGCCAGATCAGAATGAAGAAAGGTAGATTAACTAGCCAGATCAGAATGAAGAAAGGTAGATTAACTAGCCAGATCAGAATGAAGaaaggctatgttacaggacatgcATGATGTTATTGGCAACGGTTCTATTTCTTATGCAAAACAGTCTTTTCTGAAATTATTACCTAGAAAATTACTGTAATTTGAATTGTAATTTAAATTCGGAGGCCCAATATGATTCAACACTACTGTGCTAATTTAAGATATTTACTTAAATTAAtctattaaaaatacaattattgtAAAAAGGTTATATATAGATTATAATTCATATGTGtttgtatttaaaataaatatagaAAAAGGAATGGAATGTGTTACAGAAAGTAGTGAAATGAATGCAAAATTAAAGATGCATAGTGGAATTGAATATTGACCAATTATAAGCAATGACCATTATGGGATAGTGCAACCTGAAAAGGCCAAATCTCCATAATCTATGTATATAATATTATCACTGTTTTCCAAGATCCGGCCATTTTTACCACTATTTTACCCCTTTACTTATTTTCCTTTGAAAAGCACAAAGTTCCAGTGTGGATCTCAAAGCTTCCCATTCGGTATGACTATTACAAAATGCAGATTAACATTATCATACCAGAGACTGTTACAATTGTATCTTTGTTTTCTAAAGaacaataacttttttttttttaaagaatcatTTTGTAGGATGTGTTCTATGTAAGAGTGAGATGGACCAAAATCATACACATGTcaataataaaaaaacaagatTACCAACCTATTGACATGAGACATATATATCCCTCCCATCCCGTCAATCCAGATAACACAGTACTATAAGCATTATTATCACAGAAGTAGCATTTGAGCAGTGACTGCATGACAATTCCTTCTAACAATCCAGAGATACTGTTTAAACTTCAAACTTGTTTCCCACATTAGTCCAGACCTCAGGAACAGTCGTGAAAAGTGACCAAATTATCTGATGAAACTACAGAGATGATAGCCAGTCGTCTGTTGTTAGTCAATCATTCTAGTCCTAGTCTGACTGTGCAGGTTTCCTATGTCAGGTTCTGTAAGAGAAGTGTTATAGATGGACCACAACCTATCCTGGTCCGAAAACATAGGCCAATATTACTACTGAAATTATACttttctttttcattttttttgaaAGAGGAAACATTAATTATCAAGTTTTTtttcaataaataaatatatatatagtatcaATCAAAAATatgcacacacctactcattcaaaggtttttcttaattttttacattgtatattaatagtgaagacatcaaaactatgaagtaacacatatggaatcatgtagtaaccaaactgAGATGATTTGGGaggagttggaccacagagtgaaggaaaagaagccaacaagtgctcagcatatgtgggaacttcaagacgattggaaaatcattccaggtgaaactggttgagagaatgccaaggcgacttatatatttgtttaacacttttttggttactacatgattccatatgtgttatttcatagtttttctgccttcacttttattctacaatgtagaaaatagtaaaaataagaaaaacccttgaatgtgtagatTTGTCCAAACTGTTgattagtactgtatatatacatatacagtggggcaaatgcaaattaattagttAAAATTCATtcaatgtgatttcctggatttttgttttagattccgtctctcacaattgtagtgtacctatgataaaaaaaattacaaacctctacgtgctttgtaagtaggaaaacctgcaaaatcggcagtgtatcaaatacttgttctccccactgtgaaGACCgattagtactgtatatatacatatacatatatagatCGATTATATAGTAATCCAAACAAATTATCAAAGTTGTATTTCTATAAAGATTAAACTAGTTTGTTTCCATGGCAGCGACAAATGACAAGGATCTGGTTTAAATGAGTCATTTTAGTCACTGCAAAGAATATAAAACTAAAATGTGCAATGAATTAAGGTTCCCATTAATTTTGTATAAAGTTACCATACTGCAGTTTTCTGTCTTAAATGATGTTGTAAAACTCTACTGCGTTATACATGTAACTGTGAATGTCCAGATGAGTTTTTTTTTGTCTAAATGTTGAAAAAAATCTGCTATTATTTGCTGTTTTCTGCAATAATAGGATTATTTCAGAAACCTAAAGCACATATAtctcatattatattatatctttctgaaatgtaaaaaaaaaataatagatggcaataacaataatagtagAATAATTAAATCATAGATAGATACACTTGTCTAGTCAAAGAATCTTGTTTTGTATATTTCTACCAGTCTCATGGGCCTAATGTAAAATATTCTATGTACAATATATAATACATGGTGTTAGATGGTGTTATATGAAAAAAGCATGATTGCCATATATGTTATCTGCAGAAGTAAATAAAGAACTATAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU749627 False 2975 lncRNA 0.31 2 86514022 86540716
TU749630 True 2933 lncRNA 0.31 2 86514064 86540716

Neighbor

gene id symbol gene type direction distance location
LOC118965394 NA coding downstream 506966 86004625 ~ 86007056 (-)
hrh1 hrh1 coding downstream 649473 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 658170 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 955690 85557907 ~ 85558332 (-)
LOC110511195 LOC106583764 coding downstream 962302 85392855 ~ 85551720 (-)
LOC110528661 dusp7 coding upstream 145556 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 173563 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 183052 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 404081 86944797 ~ 86966992 (-)
atrip atrip coding upstream 466722 87007438 ~ 87053874 (-)
G659400 NA non-coding downstream 3856 86509853 ~ 86510166 (-)
G659352 NA non-coding downstream 5616 86397563 ~ 86508406 (-)
G659385 NA non-coding downstream 31970 86481521 ~ 86482052 (-)
G659384 NA non-coding downstream 36438 86476840 ~ 86477584 (-)
G659348 NA non-coding downstream 101054 86405133 ~ 86412968 (-)
G659412 NA non-coding upstream 4991 86545707 ~ 86546049 (-)
G659419 NA non-coding upstream 45873 86586589 ~ 86587058 (-)
G659421 NA non-coding upstream 52719 86593435 ~ 86593729 (-)
G659423 NA non-coding upstream 56961 86597677 ~ 86598003 (-)
G659553 NA non-coding upstream 122812 86663528 ~ 86666153 (-)
G659250 NA other downstream 353099 86160242 ~ 86160923 (-)
G658255 NA other downstream 1506517 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2557254 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 2898024 83608532 ~ 83615998 (-)
G656314 NA other downstream 3185842 83327479 ~ 83328180 (-)
G659543 NA other upstream 91691 86632407 ~ 86633856 (-)
G659824 NA other upstream 463020 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 744185 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 1712347 88253063 ~ 88345745 (-)
G661128 NA other upstream 2218777 88759493 ~ 88759938 (-)

Expression


Co-expression Network