G659553


Basic Information

Item Value
gene id G659553
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86663528 ~ 86666153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU750093
CAATGATGTCATTCATGAGGCAGAACATGACTGTGGAATCTCGTGGAATCCAGACAGGAGTTGAGGGAGACCGAAGAAGTGACTGAGTAATTGGTGAGGAGAGAGACGAAGTGAATGAATAAAGTCTTTGGTGACAATCAGCTTTGAAATCAGCAGAGTACTCGGGTAGTGAATTCATCTGTCGGCTAGCAAGGAAAGTTAGCCTAAAAAGCTGGAAGCTACCGGTATCTtcatcaaattcaaatcaaagtttatttgtcatgtgtgcCGAATTCAAcattaccttacagtgaaatgcttacttacaggctctaaccaataatgcaaaaaaaggtattaggtgaacaataggtaagtaaaacaacagtaaacatcaaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagagagactatatacagtagaggggctctatacagtagaggctatatacagtagagaggctatatacagtagagaggctacatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagaggttatatacagtagagagactatatacagtagaggggctctatacagtagaggctatatacagtagagaggctacatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagaggctatatacagtagagaggctacacacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagagactatatacagtagagagactatatacagtagagaggctatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagagactatatacagtagagagactatatacagtagagaggctatatacagtagaggctatatacagtagagaggttatatacagtagtgaggttatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagaggttatttacagtagagaggctatatacagtagagtggctatctacagtagagaggctatatacagtagagaggctatatatagtagagaggctatttacagtagagaggctatatacagtagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagcgaggctacatacagacaccggtttgTCAGCCtgattgagatagtatgtacatgtagatatggttaaagtgactatgcatatatgatgaacagattTCCTGTCATCAACCTCTTGCCTGATATCCGGGACTAGGTtattagccttttccctgcctgtactgttaccttGTTGGagtccctgtgtatgaccttctgcctgcccctggacccagctacctgcccctggacccagctacctacctcctcctgtgtatgacctcctgcctgccgctggacccagctacctgcccctggacccagctacctgcctcctcctgtgtatgaccttcagcctgccc
>TU750098
CAATGATGTCATTCATGAGGCAGAACATGACTGTGGAATCTCGTGGAATCCAGACAGGAGTTGAGGGAGACCGAAGAAGTGACTGAGTAATTGGTGAGGAGAGAGACGAAGTGAATGAATAAAGTCTTTGGTGACAATCAGCTTTGAAATCAGCAGAGTACTCGGGTAGTGAATTCATCTGTCGGCTAGCAAGGAAAGTTAGCCTAAAAAGCTGGAAGCTACCGGTATCTtcatcaaattcaaatcaaagtttatttgtcatgtgtgcCGAATTCAAcattaccttacagtgaaatgcttacttacaggctctaaccaataatgcaaaaaaaggtattaggtgaacaataggtaagtaaaacaacagtaaacatcaaaacaacagtaaaaagacaggctatatacagtagagaggctatatacagtagagagactatatacagtagaggggctctatacagtagaggctatatacagtagagaggctatatacagtagagaggctacatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagaggttatatacagtagagaggctatatacagtagagagactatatacagtagaggctatatacagtagagtggctatatacagtagagagactatatacagtagaggctatatacagtagagtggctatatacagtagagagactatatacagtagaggggctctatacagtagaggctatatacagtagagaggctacatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagaggctatatacagtagagaggctacacacagtagagaggctatatacagtagagaggttatatacagtagaggggctatatacagtagagagactatatacagtagagagactatatacagtagagaggctatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagagactatatacagtagagagactatatacagtagagaggctatatacagtagaggctatatacagtagagaggttatatacagtagtgaggttatatacagtagagaggctttatacagtagagaggctatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagaggttatttacagtagagaggctatatacagtagagtggctatctacagtagagaggctatatacagtagagaggctatatatagtagagaggctatttacagtagagaggctatatacagtagaggttatatacagtagagaggctatatacagtagagaggttatatacagtagagaggctatatacagtagcgaggctacatacagacaccggtttgTCAGCCtgattgagatagtatgtacatgtagatatggttaaagtgactatgcatatatgatgaacagattTCCTGTCATCAACCTCTTGCCTGATATCCGGGACTAGGTtattagccttttccctgcctgtactgttaccttGTTGGagtccctgtgtatgaccttctgcctgcccctggacccagctacctgcccctggacccagctacctacctcctcctgtgtatgacctcctgcctgccgctggacccagctacctgcccctggacccagctacctgcctcctcctgtgtatgaccttcagcctgccc

Function

NR:

description
PREDICTED: collagen EMF1-alpha-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU750093 False 1778 lncRNA 0.41 4 86663528 86666153
TU750098 True 1830 lncRNA 0.41 4 86663528 86666153

Neighbor

gene id symbol gene type direction distance location
slc6a1b slc6a1 coding downstream 113854 86517494 ~ 86549674 (-)
LOC118965394 NA coding downstream 656472 86004625 ~ 86007056 (-)
hrh1 hrh1 coding downstream 798979 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 807676 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 1105196 85557907 ~ 85558332 (-)
LOC110528661 dusp7 coding upstream 20119 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 48126 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 57615 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 278644 86944797 ~ 86966992 (-)
atrip atrip coding upstream 341285 87007438 ~ 87053874 (-)
G659423 NA non-coding downstream 65525 86597677 ~ 86598003 (-)
G659421 NA non-coding downstream 69799 86593435 ~ 86593729 (-)
G659419 NA non-coding downstream 76470 86586589 ~ 86587058 (-)
G659412 NA non-coding downstream 117479 86545707 ~ 86546049 (-)
G659249 NA non-coding downstream 122812 86514022 ~ 86540716 (-)
G659558 NA non-coding upstream 8488 86674641 ~ 86679930 (-)
G659532 NA non-coding upstream 9308 86675461 ~ 86681451 (-)
G659536 NA non-coding upstream 10237 86676390 ~ 86682094 (-)
G659534 NA non-coding upstream 10708 86676861 ~ 86684069 (-)
G659560 NA non-coding upstream 11776 86677929 ~ 86678920 (-)
G659543 NA other downstream 29672 86632407 ~ 86633856 (-)
G659250 NA other downstream 502605 86160242 ~ 86160923 (-)
G658255 NA other downstream 1656023 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2706760 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 3047530 83608532 ~ 83615998 (-)
G659824 NA other upstream 337583 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 618748 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 1586910 88253063 ~ 88345745 (-)
G661128 NA other upstream 2093340 88759493 ~ 88759938 (-)
G661426 LOC106583832 other upstream 2386923 89053076 ~ 89061481 (-)

Expression


Co-expression Network