G659534


Basic Information

Item Value
gene id G659534
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86676861 ~ 86684069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU750060
TTACTCTGTTTTtcaccataataataataataattctagaATTAGAGTTCGACACGTAAATACAGAATACAGCTGTATCGCTGACTGCTTAGATTTGTATTTTCTTTGTCGGGTGAATTTGCCCCTAAATACTGATCACGGGTCAGTTTAGCAATTTCTCCACTaatgtttaaggttaggatttggaTAGGGAAGGCTGATTCTAGACCTGTACCTAGGGGAAAAGTTACCCACGGAGCGCTCTGCTTTGGGACTGAAGCTCCCTTTCCTTCGTCTGGGGTGTCCAAAGTACAGGGGCTTCATTTGGTTTGCTAGCCTGGGTCCCACATCTGTGCGTTATCTCGCCAGTGTAACAGAGTGAGCCTCGTAAACATTACTCTCCAGCTGAGGCCGTGTGAGGAAGAAATCTATACCGTTAGGCGAGCACAGGGAAGCCTGTTACACCAACTCCATTGTCAAGCCAGACACATGTGTTTCCTACAAAGCAAAAAACAGACCGGCACCCAGGCTAATACGGTGATAGGTAGCCTTGCagtaagagcgttgggccagtaaccgaaaggtcgttGGTTCACCCTGTCGGCTTAGGGGTTTGAAccatctgtcgatgtgcccttgagcacaTTACTCCTAATGGCTCCAGGGTCGTCGCTGTTAATattggcagaccctggccgtgaccccactctctggggttgtctcagggagagttgggatatgcaaaaaaaaaaaaaaagttttttttaaaattaaattcaCACATGCCTATTAATACACATGTGAAACAAGACTCTAAGCTCTTCTTAATAACAGCAGTTTGTTTGCTGCGTCTCAACACCTAGCCCGCggagccagtctgtttgtgctaacattccactccttatCCTCTCGTGTCCTATGTTTAGCCATTGGAGTGGAACGATAACACGGACATATCTGGGACTAGGCTACAGAGCCAGGAGACAAACCCTGCACTTATATCTGAGTGTAATTCTGGATCTGTCGTAGCTCGTTAAAATCCAAatgacttttcttttcttcttcAGTGATTTTAGTTTTGTTTTTGATAATGTGCTCTATCCTATCTGTCTAATTCCTGTGGCCTTTCAATATATTATATCTTAAAGCCGATATGCAAAGTTGTTTCTCCGAAATATAATATATAGCATTATTCCAGATGAtaatgagtttttttttttttttttttacatatgctCGATAGGACTTTATCAGTTTGGAGTCTGAACCCAGTCACAACCATAAGGAAATGTGGACAAGTCGATCACACGTCGTCCCAAATCGCACACTTTATAGTGCGCTACTTCTTGACGATgcctccatagggctctggtctaaaatagtgcattatgtagggaatagggtgccatagggctctggtctaaaatagtgcattatgtagggaatagggtgccatagggctctggtctaaagtagtgcactatgtagggaataaggtgccatagggctctggtctaaagtagtgcactatgtatggaatagggtgccatagggctctggtctaaagtagtgcactatgtagggaatagggtgccatagggctctggtctaaagtagtgcactatgtagggaatagggctctggtctaaagtactgcactatatagggaatagggtgcaatttgggacacagaggTACCCTAGGGTTGAAATTTATTTCAGTGCCGaagtttttttaaattgttttttttaagaGAAAATTGTTGATTTCAAGCTGCTTCATGTGTTAATGACTAAGTGTTTTTCTCTGTTTGTATATTTGACAAAACAcaagaatatttgtattttttgttgtgaCATTTTATTGTAGCTTCTTCCTGTTAACTAAGcatgcgtcccaaattgcaccctattccctatatatagtgcactactttagaccaagttTCAAACAGGTCAAAATTTGTGcaatatatatggaatagggtgcaatttggggcATAGACCTAAGAGTGTGTTGGATCcgtgagatggagggagtgagagaggccAGGGAAAAGAGGAGAAGAACGGAAGTGAatgtttacagtgccttcacaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU750060 True 2081 lncRNA 0.42 2 86676861 86684069

Neighbor

gene id symbol gene type direction distance location
slc6a1b slc6a1 coding downstream 127187 86517494 ~ 86549674 (-)
LOC118965394 NA coding downstream 669805 86004625 ~ 86007056 (-)
hrh1 hrh1 coding downstream 812312 85856689 ~ 85864549 (-)
atg7 atg7 coding downstream 821009 85764638 ~ 85855852 (-)
LOC118965326 NA coding downstream 1118529 85557907 ~ 85558332 (-)
LOC110528661 dusp7 coding upstream 2203 86686272 ~ 86704088 (-)
LOC118965395 NA coding upstream 30210 86714279 ~ 86715176 (-)
poc1a poc1a coding upstream 39699 86723768 ~ 86820513 (-)
LOC110528663 LOC106583798 coding upstream 260728 86944797 ~ 86966992 (-)
atrip atrip coding upstream 323369 87007438 ~ 87053874 (-)
G659553 NA non-coding downstream 10708 86663528 ~ 86666153 (-)
G659423 NA non-coding downstream 78858 86597677 ~ 86598003 (-)
G659421 NA non-coding downstream 83132 86593435 ~ 86593729 (-)
G659419 NA non-coding downstream 89803 86586589 ~ 86587058 (-)
G659412 NA non-coding downstream 130812 86545707 ~ 86546049 (-)
G659567 NA non-coding upstream 21265 86705334 ~ 86767759 (-)
G659614 NA non-coding upstream 148662 86832731 ~ 86833402 (-)
G659619 NA non-coding upstream 203957 86888026 ~ 86888512 (-)
G659827 NA non-coding upstream 244189 86928258 ~ 87009364 (-)
G659543 NA other downstream 43005 86632407 ~ 86633856 (-)
G659250 NA other downstream 515938 86160242 ~ 86160923 (-)
G658255 NA other downstream 1669356 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2720093 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 3060863 83608532 ~ 83615998 (-)
G659824 NA other upstream 319667 87003736 ~ 87007292 (-)
LOC110528667 cenpp other upstream 600832 87114104 ~ 87293966 (-)
LOC110528687 LOC106583825 other upstream 1568994 88253063 ~ 88345745 (-)
G661128 NA other upstream 2075424 88759493 ~ 88759938 (-)
G661426 LOC106583832 other upstream 2369007 89053076 ~ 89061481 (-)

Expression


Co-expression Network