G659827


Basic Information

Item Value
gene id G659827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86928258 ~ 87009364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU750485
aaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactggaaaaacagcttctatctcaaggccttcagactgttaaatagccatcactagccggccttcacccagttactcaaccctgcaccttagtctgctgccccatatacataaacatggaatcactagtcactttaacaatgtttCCATACTGcatttactgtattttagtcaatgccactctgacattgctcatcctaatatttttCTATTTCTTAATTACATTTTACTTCTAGATTTGTCTGTATTGTTGACAATTGtttgatactactgcactgttggagccttTGGCTacaccgcaataacatctgctaaatacgtgtatgtgagcaatcaaatttgatttgacacaggtgcaccttgtgctggggacaataaaaggccactctagaaTTTGCCGTTttctcacacaacacaatgccacagatgtctcgagtgttgagggagcgtgcaattggcatgctgactgcgaGTGTCAAATAATTAaaagttaatttctctaccataagccgcctccaacattttcgagaattttgcagtacgtccaaccggccgcACAAACACATGTATGGCGTTCTggtgtgaacagagtgctccatggttatggtatgggaaggcaTAAGCTCCGGACAACGAACAGAATTGctttttatcaatggcaatttgaatgtgcagagataccgtgaccaaatcctgaggcccattgtcgtgccattcatccaccaccgtcacctcatgtttcagcatgataatgcacggccccatatcGTAAGGATCTgtccacaattcctggaagctgaaaatgtcccagttcttccatggcctgcatactcaccagacttgtcacccattgag

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU750485 True 896 lncRNA 0.44 2 86928258 87009364

Neighbor

gene id symbol gene type direction distance location
poc1a poc1a coding downstream 107745 86723768 ~ 86820513 (-)
LOC118965395 NA coding downstream 213082 86714279 ~ 86715176 (-)
LOC110528661 dusp7 coding downstream 224170 86686272 ~ 86704088 (-)
slc6a1b slc6a1 coding downstream 378584 86517494 ~ 86549674 (-)
LOC118965394 NA coding downstream 921202 86004625 ~ 86007056 (-)
LOC118965396 NA coding upstream 48904 87058268 ~ 87059864 (-)
LOC110528667 cenpp coding upstream 104740 87114104 ~ 87293966 (-)
wu:fb55g09 cl012 coding upstream 331825 87341189 ~ 87342665 (-)
si:dkeyp-87e7.4 LOC106583812 coding upstream 400816 87410180 ~ 87425169 (-)
LOC110528674 pdhb coding upstream 468025 87477389 ~ 87494213 (-)
G659619 NA non-coding downstream 39746 86888026 ~ 86888512 (-)
G659614 NA non-coding downstream 94856 86832731 ~ 86833402 (-)
G659567 NA non-coding downstream 160499 86705334 ~ 86767759 (-)
G659534 NA non-coding downstream 244189 86676861 ~ 86684069 (-)
G659881 NA non-coding upstream 23438 87032802 ~ 87033655 (-)
G659907 NA non-coding upstream 88511 87097875 ~ 87102174 (-)
G659925 NA non-coding upstream 118931 87128295 ~ 87128815 (-)
G659930 NA non-coding upstream 137325 87146689 ~ 87147130 (-)
G659936 NA non-coding upstream 149033 87158397 ~ 87159244 (-)
G659543 NA other downstream 294402 86632407 ~ 86633856 (-)
G659250 NA other downstream 767335 86160242 ~ 86160923 (-)
G658255 NA other downstream 1920753 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2971490 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 3312260 83608532 ~ 83615998 (-)
LOC110528687 LOC106583825 other upstream 1243699 88253063 ~ 88345745 (-)
G661128 NA other upstream 1750129 88759493 ~ 88759938 (-)
G661426 LOC106583832 other upstream 2043712 89053076 ~ 89061481 (-)
G661335 NA other upstream 2087683 88831729 ~ 89104274 (-)

Expression


Co-expression Network