G659841


Basic Information

Item Value
gene id G659841
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86941822 ~ 86944512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU750500
GGGGAAAAATGGTTTTgaaacggtcatccaactcagaattccaaatcagaaactctggcatctttctagagctcgtaactttctgacctgaagatcactgacgttgTGGTTTGACctcgttccccccccccccccccccccccccccccgagttcccagttgtcttgaaagcagtGTTATTCTCtttttatagtccactactggTGACCAGGGACCACTACTGGTGACCAGGGACCATCgtgctctggttaaaagtagtgtactgcgtagattgtctatatccctcaaactcaactctggaccaaGAAACCAGTTGCACTGCATTTTTCCCCCCATTGTTCCCCTCtattcagggactgatttagactgTAGACATCAGgtgggtgattcccctctaatcagggactgatttagaccctGGACACCAGGTAGGTGCGATTTTTAAGTATCAGGTAGAACCgaaaaccagcaggctcgtaGGATAGGAGTTGAATACCACCGGTCTATATGGTTTAAATACATTTCAGTAAAATACGTTTTGTGTTTTTCTCACATCTCTTGCCGTGAAAGACTCTCGAGTCCTCTGGTTTGAAGTACTAACCCAATAAGGAGTTTATAACTCtaagggctggtttcccagacacagctATTGTaatatttacacaggcagcccaattctgttttttttgttttttttacactaattggtactttgaccaatcagatcagctctgaaaaagatctgatgtgattggtcaaaataaaaatttgtgtgttaaaaaaaaaagaaaaaaaaacgacagtatttgggctgcctgtgtaaatgcagcttTAGCGATCCATATGAGATGCTCTGTTGACAATGAATCTTAGTCCAAGGCAAGTGattaggttctaattctcagagtaaaaaaaaacactatggTCATTTatgaaagcttaaccaagtttcATTCTTCCCAGAGTGTCAATACAGCTGCATTCAGACAAAACATGTTTCCACcaacacgtgtgtgtgtatatatatatatatatataatctccaATGTAGGCACAACACTTTTTTTCCAATCCTTCCATCTTTTATGGTTTGACAGGAAGAGGAAGTGATGGGGTAATAAACCATTGAGGTCAGGTCAGAGCTTAAGGGAGAAACAATCTCCTTGATGCTTAACCCAAAGACCTCCACCCGTATCCCCCTCTAGCAACCCTGTGACTTCCTCCCGTCCACCCAGCACATTTCAAAGCCATCtggctcctacagataaccatgaACACTTCTGATGTAAAAACCAGTCTCTTATCAgcccctcagatactatagtctTACTTCTGATCTATCATGTCTCTAGGATAGCAATGTTCCAAGTTTAACCCAGAATCCAACACTAGGTTTAATCTGAATCCAGGAAACCGGCCCGTAGTGTGACGTTTATAGTGCATCTGAAGATGGATCCCAGAAGGTTTCTACAGTACACATTAGAAATGATAGTCCCAGAAGGTTTATACAGTACACACtataaatgatagtcccagaaGGTTTATACAGTACACACTAGAAATTATAGTCCCAGAAGGTTTCTACAGTACACGTTAGAAATGATGCCGTGGTCTTGTGACAGTTCCAGGGTTCCGAGATTCCACTGTGAATGACCAGCAGGTAAGATTATTCCTTTGAACTTGAGTCATAAACAATTAATTACACTGTAACAATACTTCTTATTTTTGTAAGTATTTGGTCACGTGTCACACTTGAGCAAGATTAAAGTAAAACTAATCTCTCTTATTTTAATCCATTTTCCACATCGCAACTCTGATCAATGGAAGCGTTTATTTTCCTAGTTAAATCAAGACACTGTTGAGTAGCTGGCAAGCACACACGAGATTTGTTTATGAGGATTAGTGACTATGAAGCCTTTTGTTTAGCCTGGCTCTGGCACAAATCAGTCCGGTGCTGATATCGAGTGTGACTAAAGTACTAATGGAGACATatccacagtcccctccccgATTTCATCGTCGGGGGACAACTAAAATCAGATCTCCACAACTCAGTGGAGATCGAAGCCGTCCCTGAGCCAGGGTCTGGTAGCCCATAGGTTAAAGGTCACTGAAAAGACGTTGCCACAAGCAGCGCCGAAGATTATGGGCGTGATCGAACGGATCGCTTTTGTCAAATCGGTGactttcaaagtgtgttgcattatgggaaTAAAAATGGTCAGACTTGCGCCTAATGTGTAGACTGCGTAAGCTTGACATAAATCACGTGATCATGGGTCGTGAAGTTTTGACTGCTGTCGACTAGAAGTTCCTGGAAGTTGCTCTTCACTAACTTCCTCCTGCAGCCATCTTCTGCACTGTGGGAGGAtctattgtcaaccaatcatcaggGTGTTTTTTGTTTTGACCCACACGAACGTGACCAAATGTAATCTTTgagtctctcaattcaattcaaagggctttattggcatgggaaacatatgttaacattgccaaagcaagtgaagtagatgataaacaaaagtgaaataaaaaatgaatagtaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU750500 True 2555 lncRNA 0.42 3 86941822 86944512

Neighbor

gene id symbol gene type direction distance location
poc1a poc1a coding downstream 121309 86723768 ~ 86820513 (-)
LOC118965395 NA coding downstream 226646 86714279 ~ 86715176 (-)
LOC110528661 dusp7 coding downstream 237734 86686272 ~ 86704088 (-)
slc6a1b slc6a1 coding downstream 392148 86517494 ~ 86549674 (-)
LOC118965394 NA coding downstream 934766 86004625 ~ 86007056 (-)
LOC110528663 LOC106583798 coding upstream 285 86944797 ~ 86966992 (-)
atrip atrip coding upstream 62926 87007438 ~ 87053874 (-)
LOC118965396 NA coding upstream 113756 87058268 ~ 87059864 (-)
LOC110528667 cenpp coding upstream 169592 87114104 ~ 87293966 (-)
wu:fb55g09 cl012 coding upstream 396677 87341189 ~ 87342665 (-)
G659619 NA non-coding downstream 53310 86888026 ~ 86888512 (-)
G659614 NA non-coding downstream 108420 86832731 ~ 86833402 (-)
G659567 NA non-coding downstream 174063 86705334 ~ 86767759 (-)
G659560 NA non-coding downstream 262902 86677929 ~ 86678920 (-)
G659846 NA non-coding upstream 1958 86946470 ~ 86947219 (-)
G659881 NA non-coding upstream 88290 87032802 ~ 87033655 (-)
G659907 NA non-coding upstream 153363 87097875 ~ 87102174 (-)
G659925 NA non-coding upstream 183783 87128295 ~ 87128815 (-)
G659930 NA non-coding upstream 202177 87146689 ~ 87147130 (-)
G659543 NA other downstream 307966 86632407 ~ 86633856 (-)
G659250 NA other downstream 780899 86160242 ~ 86160923 (-)
G658255 NA other downstream 1934317 85006726 ~ 85007505 (-)
LOC110528632 LOC105007334 other downstream 2985054 83954195 ~ 84332909 (-)
G656671 dag1 other downstream 3325824 83608532 ~ 83615998 (-)
G659824 NA other upstream 59224 87003736 ~ 87007292 (-)
LOC110528687 LOC106583825 other upstream 1308551 88253063 ~ 88345745 (-)
G661128 NA other upstream 1814981 88759493 ~ 88759938 (-)
G661426 LOC106583832 other upstream 2108564 89053076 ~ 89061481 (-)

Expression


Co-expression Network