G659640 (LOC106583798)


Basic Information

Item Value
gene id G659640
gene name LOC106583798
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 86944798 ~ 86967074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU750205
cctttttacaagataagttacATTTTTAATTTGGGAGGTATTCCATTTGTTACATGTGTCAAGCTTTGAAAATTAGACAAACAAACGCACATTGTAGATAATTAGGCACGCCTTTCCATTCTTTTGTATGAAATTGCGCAAACTCCAAGAGTGTCTAATTAGCTCCTTAAAACCCTCGATAATTATTTAATCCCTCAGCTTTGGGACAGTCGTGCATATGGCGGAGGTGCAAGTGAAACCTCAAAATGTAGGGCTGAGGGAAGAGTGATTTGGGACTAAGACGAGAGGAATGGGTTGAGTGTATTCTGTAGTGTCATCCCGCGTGAGCTGAGATGGGGTGGCTCAGGCCTCTGAagtaagactgttctctctcagtCATCAGCTCAAAGTGCAGCGGCTGCTGGCAGAAGTTACACTCTGCCGAAGAATGGGGCTTCAGAGGTAGACCGGACTCCTTCCACGTCTGAA
>TU750211
TAGTGATTCTCACCCTGACAGGGATGATGTGCGAGGGACAGTGGACGACGGGCAGTCCGGAGTCCATGAGCATCTGTCTCAGCAGCTTGACGTTGCGCTGGTGTTTCCGCCGGAGGGCGCGACCCTCCTCCCCTTTAAGGGTCTGGATGGACTCGCGGGCGCCCGCCAGCAGCATGGGAGGCAGAGACGTGGTGAATATGAAGCCGGCAGCGTAACTACGCACCGTGTCCACCAGGGCGTCGGTACTGGCGATGTAGCCTCCAACACAGCCAAACGCCTTGCCCAGTGTTCCGGAGATGATGTCCATCTTGTGCATGATGCCGTCTCGGTCCCCGATACCTCCTCCTCTAGCGCCGTACAGCCCCACCGCATGCACCTCGTCTACAAACGTGATGGCTCCAAACTCATGGGCCACGTCACACAACTCATCCAGAGGACACACCGCACCATCCATGGAGTGGACCGTCTCGAAGGCTACGATCTTTGGAGTGGACGGGTCTGACTTCTGTAGCAGCTCTCTCAAGTGGTCGGGGTCATTGTGACGGAATACGAATTTCTTGGCTCCGCTGTTCCTGATGCCCTGGATCATTGAGGCATGATTCCCTGCATCAGAATATATTTCacagcCTGGTATCATCTTGGCCAGGGTGAACAGGGTGGAGTCATTGGCTACGAAGCAGGAAGTGAAGAGTAGCGCAGCGTCCTTCCTGTGGAGATCTGCTAGTTCCTGTTCCAGTTCCACGTGGAACTTACtggtcccagaaatgttcctgGTTCCTCCAGCCCCACTGCCGTGCTTACGCAACGTCTCCGTGATGGAGTTGACGACCCGCGGGTGTCTGCTCATGCCCAGGTAGTCGTTGGAGCACCACACAGACACGTCTCTCCTGTCGCTAAGGGAATCGGTGTAGTCGTCACCCATGGGGAAGTCCGTGGCTCGCCGGTTAACCGTCTTAAAGACACGGTACGTGTGGTCACTCTTCTTCTCCTCAATCTTCCTCTCAAAGAACTCATCGTAGCGGAAGTTAGAGAAGCTGGGCATGTTCTCCTGCAGTAAATGGGACACCCTGGTTGGACGTTGATTCAGCAGCTTCTTCATCAGATCGGTTCGGGTAAGACCTCCAGACTTTGAGGAGGAACTACTGGCCAGAGCCTGGGCTGGGGTCACATCTTCTGAACGGTGCGGACCTCCTGCACGTCCTCCTGCAGCTGGAGGCTGGCCTGGCGCACCACACTGCTGTTCTGGCCCATCTCAGCCGCCAGGAAGGGGCACTTGGAGGCCACCGAGGCCTGGCCAGAGGGGTGCTTGGGATGGGGGTGGCTCTGAGGCagcttggtggtggtggtggtgcctcCATCCGCTACCTTCTCGGCTGATGTCTGAGCTGAAGTCACCGTGTCATCAGCTTTCTGGAAGCAAGCCGGTGAGGAACAGAGGGAGCGGGCCAGAGGCTTGGAAGCGAGGTCCATCATCACAGGACATTTCTGGGCATAGACCACCAGGGATTTCCGGGCCTGCTGGAAGAAGGCCTGGGGAACACGGGACAGGAACGGGCAGCGGCGAATTATAGTCTCCATCCTTCCAACGATTGTCCAAGCCTCGATATGCTTCGGATCACCTTCTCACAACTAAGCTTGAAAAAAAGCTAGATTGTCTTGGAAAGATCTCAGCGGCTGTTTTATTGTAAATATAACACTCTTAATAGTTCATatagctactgctccaaaactacGTTTCGTTATCCTGCACTGAGGACGAACGAAAGGACAAGGATAGACAACCGGGTTTATAAGAACGAATACTAACGCCAAATCTCGCGAGAGGATGAGTGTGTACGTCACAGCCCTCCAGAAAGTCATT
>TU750208
aaatgctGTTAACTAGTAGTCATTGGAACCAACAATGTTTAGTTTTAATACTGACCCAGTGTTCCGGAGATGATGTCCATCTTGTGCATGATGCCGTCTCGGTCCCCGATACCTCCTCCTCTAGCGCCGTACAGCCCCACCGCATGCACCTCGTCTACAAACGTGATGGCTCCAAACTCATGGGCCACGTCACACAACTCATCCAGAGGACACACCGCACCATCCATGGAGTGGACCGTCTCGAAGGCTACGATCTTTGGAGTGGACGGGTCTGACTTCTGTAGCAGCTCTCTCAAGTGGTCGGGGTCATTGTGACGGAATACGAATTTCTTGGCTCCGCTGTTCCTGATGCCCTGGATCATTGAGGCATGATTCCCTGCATCAGAATATATTTCacagcCTGGTATCATCTTGGCCAGGGTGAACAGGGTGGAGTCATTGGCTACGAAGCAGGAAGTGAAGAGTAGCGCAGCGTCCTTCCTGTGGAGATCTGCTAGTTCCTGTTCCAGTTCCACGTGGAACTTACtggtcccagaaatgttcctgGTTCCTCCAGCCCCACTGCCGTGCTTACGCAACGTCTCCGTGATGGAGTTGACGACCCGCGGGTGTCTGCTCATGCCCAGGTAGTCGTTGGAGCACCACACAGACACGTCTCTCCTGTCGCTAAGGGAATCGGTGTAGTCGTCACCCATGGGGAAGTCCGTGGCTCGCCGGTTAACCGTCTTAAAGACACGGTACGTGTGGTCACTCTTCTTCTCCTCAATCTTCCTCTCAAAGAACTCATCGTAGCGGAAGTTAGAGAAGCTGGGCATGTTCTCCTGCAGTAAATGGGACACCCTGGTTGGACGTTGATTCAGCAGCTTCTTCATCAGATCGGTTCGGGTAAGACCTCCAGACTTTGAGGAGGAACTACTGGCCAGAGCCTGGGCTGGGGTCACATCTTTCTGAACGGTGCGGACCTCCTGCACGTCCTCCTGCAGCTGGAGGCTGGCCTGGCGCACCACACTGCTGTTCTGGCCCATCTCAGCCGCCAGGAAGGGGCACTTGGAGGCCACCGAGGCCTGGCCAGAGGGGTGCTTGGGATGGGGGTGGCTCTGAGGCagcttggtggtggtggtggtgcctcCATCCGCTACCTTCTCGGCTGATGTCTGAGCTGAAGTCACCGTGTCATCAGCTTTCTGGAAGCAAGCCGGTGAGGAACAGAGGGAGCGGGCCAGAGGCTTGGAAGCGAGGTCCATCATCACAGGACATTTCTGGGCATAGACCACCAGGGATTTCCGGGCCTGCTGGAAGAAGGCCTGGGGAACACGGGACAGGAACGGGCAGCGGCGAATTATAGTCTCCATCCTTCCAACGATTGTCCAAGCCTGAGGGAAAAGAGATAAGATCAGGATCTCCTGTAAACCAGACATTTTATGGGGGTTTTTCCTATCATGTGTTTTGTCATTGATTCAAGTCTTGTCCATTTAAAACAATTTTGTAATTTTGTAGTTGTAATCAATAAAGCTATACTTCGCTCTGAGTGAGAAGTTGAACATGGGAATGCGTTATGA
>TU750210
ACTGAGTCACCTCCACAAATTCAGATTAGAACGATTCAGGCTTCACTGAGTCACCTCCACAAATTCAGATTAGAACGATTCAGGCTTCACTGAGTCACCTCCACAAATTCAGATTAGAACGACTCAGGCAAATCAGACTTGTAAACGTTATATTCAAATCACAGCACTGACGTCAACGGGATATTTTAGTTGCACATCGCAGGTCACGTTAAGGCACttcacatagggaatagggtgcattatggGACACAGGTCCACTCACCATCCATGGAGTGGACCGTCTCGAAGGCTACGATCTTTGGAGTGGACGGGTCTGACTTCTGTAGCAGCTCTCTCAAGTGGTCGGGGTCATTGTGACGGAATACGAATTTCTTGGCTCCGCTGTTCCTGATGCCCTGGATCATTGAGGCATGATTCCCTGCATCAGAATATATTTCacagcCTGGTATCATCTTGGCCAGGGTGAACAGGGTGGAGTCATTGGCTACGAAGCAGGAAGTGAAGAGTAGCGCAGCGTCCTTCCTGTGGAGATCTGCTAGTTCCTGTTCCAGTTCCACGTGGAACTTACtggtcccagaaatgttcctgGTTCCTCCAGCCCCACTGCCGTGCTTACGCAACGTCTCCGTGATGGAGTTGACGACCCGCGGGTGTCTGCTCATGCCCAGGTAGTCGTTGGAGCACCACACAGACACGTCTCTCCTGTCGCTAAGGGAATCGGTGTAGTCGTCACCCATGGGGAAGTCCGTGGCTCGCCGGTTAACCGTCTTAAAGACACGGTACGTGTGGTCACTCTTCTTCTCCTCAATCTTCCTCTCAAAGAACTCATCGTAGCGGAAGTTAGAGAAGCTGGGCATGTTCTCCTGCAGTAAATGGGACACCCTGGTTGGACGTTGATTCAGCAGCTTCTTCATCAGATCGGTTCGGGTAAGACCTCCAGACTTTGAGGAGGAACTACTGGCCAGAGCCTGGGCTGGGGTCACatctgaggagacagagaggtatagggctggggtcacatctgaggagacagagaggtatagggctggggtcatatctggagagaccggtATGAGGCTGAACAGTTATGGCAGGACTGTAGATTTGTATATAA
>TU750206
ATTTAGCTGGCCCTGTAAGTACATTGAGTTAGTTCAGTACAGATAAGGTGATATGCTTACCTGGTATCATCTTGGCCAGGGTGAACAGGGTGGAGTCATTGGCTACGAAGCAGGAAGTGAAGAGTAGCGCAGCGTCCTTCCTGTGGAGATCTGCTAGTTCCTGTTCCAGTTCCACGTGGAACTTACtggtcccagaaatgttcctgGTTCCTCCAGCCCCACTGCCGTGCTTACGCAACGTCTCCGTGATGGAGTTGACGACCCGCGGGTGTCTGCTCATGCCCAGGTAGTCGTTGGAGCACCACACAGACACGTCTCTCCTGTCGCTAAGGGAATCGGTGTAGTCGTCACCCATGGGGAAGTCCGTGGCTCGCCGGTTAACCGTCTTAAAGACACGGTACGTGTGGTCACTCTTCTTCTCCTCAATCTTCCTCTCAAAGAACTCATCGTAGCGGAAGTTAGAGActgcagggaggagaggaagcaaACATGATTAGAGAAAGATCACATTGAGGCGTCCCGTTTTAATAAGAGACAAGAGAGAACATGCTTAACGCTATCCTCTTTCAGGACACTTTGAACAGGAGCAGTCTTTCGGTTTTATTCTgtttcatagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaccaaaaCTGGGAAGTAATAGGAGACATGTACACCCTGGGTTTTATTGATAACAGAGCTAGGAGatacttggtgtgtgtgtgtgtgtgtgt

Function

NR:

description
5-aminolevulinate synthase, nonspecific, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU750205 False 468 lncRNA 0.45 2 86944798 86945295
TU750211 False 1861 lncRNA 0.56 9 86948574 86967074
TU750208 False 1559 lncRNA 0.53 7 86949473 86962347
TU750210 False 1114 lncRNA 0.51 6 86950923 86959347
TU750206 True 759 lncRNA 0.49 2 86953779 86955064

Neighbor

gene id symbol gene type direction distance location
slc6a11b slc6a11 coding upstream 538769 86344725 ~ 86406029 (+)
atp2b2 LOC106566233 coding upstream 639264 86102263 ~ 86305534 (+)
LOC110528658 slc6a1 coding upstream 911237 86018075 ~ 86033561 (+)
vgll4b vgll4 coding upstream 1200004 85649845 ~ 85744794 (+)
tamm41 tamm41 coding upstream 1296157 85630978 ~ 85648641 (+)
LOC110488455 LOC106583799 coding downstream 18477 86985551 ~ 87051602 (+)
LOC110488454 NA coding downstream 37842 86927892 ~ 87007309 (+)
si:dkey-42i9.4 btg1 coding downstream 87440 87054514 ~ 87056155 (+)
ippk ippk coding downstream 99088 87066162 ~ 87106788 (+)
ecm2 ecm2 coding downstream 149686 87116760 ~ 87156905 (+)
G659623 NA non-coding upstream 18498 86926093 ~ 86926300 (+)
G659498 NA non-coding upstream 178916 86763158 ~ 86765882 (+)
G659451 NA non-coding upstream 258407 86685091 ~ 86686391 (+)
G659450 NA non-coding upstream 261529 86676448 ~ 86683269 (+)
G659452 NA non-coding upstream 263306 86675467 ~ 86681492 (+)
G659668 NA non-coding downstream 45419 87012493 ~ 87013162 (+)
G659672 NA non-coding downstream 49290 87016364 ~ 87017560 (+)
G659701 NA non-coding downstream 114280 87081354 ~ 87089713 (+)
G659709 NA non-coding downstream 143156 87110230 ~ 87114200 (+)
G659136 NA other upstream 422976 86521060 ~ 86521822 (+)
G659058 NA other upstream 532213 86408702 ~ 86412974 (+)
G658887 NA other upstream 1048649 85895826 ~ 85896149 (+)
G658885 NA other upstream 1057677 85886592 ~ 85887121 (+)
G657481 NA other upstream 1937300 85006479 ~ 85007498 (+)
G659706 NA other downstream 133390 87100464 ~ 87102270 (+)
nisch LOC106583810 other downstream 417825 87346077 ~ 87387283 (+)
G660790 NA other downstream 1455690 88422764 ~ 88427927 (+)
G660853 NA other downstream 1655239 88622313 ~ 88689342 (+)
G660886 NA other downstream 1724820 88691894 ~ 88694076 (+)

Expression


Co-expression Network