G660371 (pde12)


Basic Information

Item Value
gene id G660371
gene name pde12
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88021002 ~ 88021785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU751162
tcctagatcagcggtCCTACTCCGAGAAGCTTTAtggatatgggccctggtctcaGGGAGGCTGCTCACTGCTTTTTCAGTTCCCAGACTGATAATTTTTATTTAAACAAGAGAAGTACTCGTTGGTCAGAACCCTGAAACACACTGTAGGGGCCCTGGTACAGAGACACACTGTAGGGGCCCTGGTACAGAGACAGACATGGTTGATCAGCCACAGACTGCTGTAAACAGGAGGGAGAGCTTTACTTCCACTTGAGGTCACAGACCAGCGCTATGTGGTCAGAGGGGTGTGAGACGCTGGGGAGGGCCTGACAGGTAGTGACCTCCTGGTGGCTGGGCAGAGGGATCATCTGATCTACCTGCAGCACCCGCGGGTCCATGAAGATATAGTCCAGGCAGCCGTGGAAGCCCCCTACGTAGTTAGTATAGGCCGGCTCCCCGCAGGCGCTACTCAGCTGGAAGGGGTTGGAGACCTCCATGGGACAGAGCTCGTCCGGTCCGTTGGAGCTCCAGTCCGGGTGGGTGCTGTGCAGAACCCCCTGGCTCACCAGCTGGAAGACCCCCGAGGACGGGGTGCTGTTGAAGTCCCCGCAGAAGAGGAGCGAGGCGTCGGGGTAACTCTGGGTGATCACCTGCTGCAGCTGTTTCAGAGCTACTGCCATCTGGACC
>TU751163
tcctagatcagcggtCCTACTCCGAGAAGCTTTAtggatatgggccctggtctcaGGGAGGCTGCTCACTGCTTTTTCAGTTCCCAGACTGATAATTTTTATTTAAACAAGAGAAGTACTCGTTGGTCAGAACCCTGAAACACACTGTAGGGGCCCTGGTACAGAGACAGACATGGTTGATCAGCCACAGACTGCTGTAAACAGGAGGGAGAGCTTTACTTCCACTTGAGGTCACAGACCAGCGCTATGTGGTCAGAGGGGTGTGAGACGCTGGGGAGGGCCTGACAGGTAGTGACCTCCTGGTGGCTGGGCAGAGGGATCATCTGATCTACCTGCAGCACCCGCGGGTCCATGAAGATATAGTCCAGGCAGCCGTGGAAGCCCCCTACGTAGTTAGTATAGGCCGGCTCCCCGCAGGCGCTACTCAGCTGGAAGGGGTTGGAGACCTCCATGGGACAGAGCTCGTCCGGTCCGTTGGAGCTCCAGTCCGGGTGGGTGCTGTGCAGAACCCCCTGGCTCACCAGCTGGAAGACCCCCGAGGACGGGGTGCTGTTGAAGTCCCCGCAGAAGAGGAGCGAGGCGTCGGGGTAACTCTGGGTGATCACCTGCTGCAGCTGTTTCAGAGCTACTGCCATCTGGACC

Function

symbol description
pde12 Predicted to enable 3'-5'-exoribonuclease activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. Predicted to be active in mitochondrion. Orthologous to human PDE12 (phosphodiesterase 12).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU751162 False 669 lncRNA 0.58 3 88021002 88021785
TU751163 True 642 lncRNA 0.57 2 88021002 88021785

Neighbor

gene id symbol gene type direction distance location
dennd6aa dennd6a coding upstream 9517 87966569 ~ 88011485 (+)
LOC110528683 slmap coding upstream 67506 87951429 ~ 87953496 (+)
LOC110528678 dnase1l3 coding upstream 362164 87647017 ~ 87658838 (+)
nisch LOC106583810 coding upstream 635679 87346077 ~ 87387283 (+)
nol8 nol8 coding upstream 705886 87293964 ~ 87315116 (+)
il10 il10 coding downstream 32326 88054111 ~ 88058818 (+)
LOC110528686 NA coding downstream 99084 88120869 ~ 88127498 (+)
LOC110528688 LOC106583827 coding downstream 217142 88238927 ~ 88241064 (+)
pdrg1 pdrg1 coding downstream 495650 88517435 ~ 88528083 (+)
LOC110528691 LOC106583835 coding downstream 757579 88777804 ~ 88781772 (+)
G660321 NA non-coding upstream 6045 88011507 ~ 88014957 (+)
G660296 slmap non-coding upstream 77543 87875255 ~ 87943459 (+)
G660327 NA non-coding upstream 99123 87921590 ~ 87921879 (+)
G660317 NA non-coding upstream 107275 87912624 ~ 87913727 (+)
G660263 NA non-coding upstream 141100 87805411 ~ 87879902 (+)
G660378 NA non-coding downstream 12783 88034568 ~ 88035208 (+)
G660389 NA non-coding downstream 39071 88060856 ~ 88061212 (+)
G660598 NA non-coding downstream 61046 88082831 ~ 88084576 (+)
G660664 NA non-coding downstream 115878 88137663 ~ 88232319 (+)
G660670 NA non-coding downstream 139247 88161032 ~ 88194958 (+)
G659706 NA other upstream 918732 87100464 ~ 87102270 (+)
G659136 NA other upstream 1499180 86521060 ~ 86521822 (+)
G659058 NA other upstream 1608417 86408702 ~ 86412974 (+)
G658887 NA other upstream 2124853 85895826 ~ 85896149 (+)
G660790 NA other downstream 400979 88422764 ~ 88427927 (+)
G660853 NA other downstream 600528 88622313 ~ 88689342 (+)
G660886 NA other downstream 670109 88691894 ~ 88694076 (+)
G661162 NA other downstream 795300 88817085 ~ 88817655 (+)
G661172 NA other downstream 951199 88972984 ~ 88975830 (+)

Expression


Co-expression Network