XLOC_025678


Basic Information

Item Value
gene id XLOC_025678
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46545014 ~ 46545481 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052369
atgaagtgaagtgtgtctgtctgttcaatacagcacgagctgcagaggcgcagagcgtgagtcaccataAGCGGAGGGTGCGGACAGCCAAAAACATTTGGTTATCTTTAGTAGAaaatgccttttgtacaatgcactgtaatcattaatagggatgcaacgattagctgatttcactattaactgcgctttagtTCCTCACAGTTAAAGAATCGTAAAGGCGCATTTCTGTTGCATGTAAAAGTTATGACAAGTTGTcacctgtgcgctagtttaaagttccaagtagGCTATGTACACTGAGGCTAATACGCACTCACACCGGATTAACTATACCAGtggccgttcccatatcacgtcttttccacTTGCGTTTGTTATTGCTAATGTAAGTATGACAATATGCGCGCACAAGTGGAGCAACGCGCTTGCGACTTTCCgggcgcacgcagtagaaaacatctcacg

Function

GO:

id name namespace
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046914 transition metal ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052369 True 468 lncRNA 0.44 1 46545014 46545481

Neighbor

gene id symbol gene type direction distance location
XLOC_025676 si:ch211-66e2.5 coding upstream 71277 46457450 ~ 46473737 (+)
XLOC_025675 si:ch211-66e2.3 coding upstream 90671 46444625 ~ 46454343 (+)
XLOC_025674 sc:d0202 coding upstream 117318 46425262 ~ 46427696 (+)
XLOC_025673 polr3k coding upstream 160867 46380086 ~ 46384147 (+)
XLOC_025672 mrtfbb coding upstream 179558 46271911 ~ 46365456 (+)
XLOC_025679 raver1 coding downstream 14158 46559639 ~ 46587006 (+)
XLOC_025680 pde4a coding downstream 83404 46628885 ~ 46754730 (+)
XLOC_025681 si:dkey-248g21.1 coding downstream 90046 46635527 ~ 46637476 (+)
XLOC_025682 prkcsh coding downstream 217222 46762703 ~ 46795783 (+)
XLOC_025683 NA coding downstream 253031 46798512 ~ 46803047 (+)
XLOC_025429 BX649540.1 misc upstream 16295978 30248739 ~ 30249036 (+)
XLOC_025668 dre-mir-2195 non-coding upstream 909828 45635077 ~ 45635186 (+)
XLOC_025667 CR392042.1 non-coding upstream 938557 45602345 ~ 45606457 (+)
XLOC_025664 NA non-coding upstream 1291482 45246037 ~ 45253532 (+)
XLOC_025662 CR385066.1 non-coding upstream 1656861 44888037 ~ 44888153 (+)
XLOC_025660 NA non-coding upstream 2491244 44000293 ~ 44053770 (+)
XLOC_025684 NA non-coding downstream 289376 46834857 ~ 46838638 (+)
XLOC_025685 NA non-coding downstream 562289 47107770 ~ 47109473 (+)
XLOC_025689 NA non-coding downstream 850054 47395535 ~ 47409399 (+)
XLOC_025690 AL928740.1 non-coding downstream 915007 47460488 ~ 47460603 (+)

Expression


Co-expression Network