G660670


Basic Information

Item Value
gene id G660670
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88161032 ~ 88194958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU751616
acagtagatctagctggtctgtcataatatagtagagacagtagatctagctggtctgtcataatataatagagacagttgatctagctggtctgtcatattataatagagactgtatatctagatggtctttcataatataataaagacagtagatctagctggtctttcatattataatagagaaagtagatctagctggtctgtcataatataatggacactgtatatctagctggtctgtcataatataatagaaccagtagatctatctggtctgtcataatataatatagacagtaggtctacctggtctgtcataatataatagagactgtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagttgatctagctggtctgtcataatataatagacacagtagatctatctggtctgtcataatataatagagacagtaggtctagctggtctgtcataatataatagagactgtgtatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatggacactgtatatctagctggtctgtcataatataatagacacagtagatctatctggtctgtcataatataatagagacagtaggtctagctggtctgtcataatataatagagactgtatatctagctagtctgtcataatataatagagacagtagatctggctagtctgtaataatacagtaggggaagtagatctagctggtctatcataatataatagagac
>TU751617
acagtagatctagctggtctgtcataatatagtagagacagtagatctagctggtctgtcataatataatagagacagttgatctagctggtctgtcatattataatagagactgtatatctagatggtctttcataatataataaagacagtagatctagctggtctttcatattataatagagaaagtagatctagctggtctgtcataatataatggacactgtatatctagctggtctgtcataatataatagaaccagtagatctatctggtctgtcataatataatatagacagtaggtctacctggtctgtcataatataatagagactgtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagttgatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatatagtagagactgtagatctagctggtctgtcataatttaatagagacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU751616 False 816 lncRNA 0.34 2 88161032 88166471
TU751617 True 523 lncRNA 0.34 2 88161032 88194958

Neighbor

gene id symbol gene type direction distance location
LOC110528686 NA coding upstream 33534 88120869 ~ 88127498 (+)
il10 il10 coding upstream 102214 88054111 ~ 88058818 (+)
dennd6aa dennd6a coding upstream 149547 87966569 ~ 88011485 (+)
LOC110528683 slmap coding upstream 207536 87951429 ~ 87953496 (+)
LOC110528678 dnase1l3 coding upstream 502194 87647017 ~ 87658838 (+)
LOC110528688 LOC106583827 coding downstream 43969 88238927 ~ 88241064 (+)
pdrg1 pdrg1 coding downstream 322477 88517435 ~ 88528083 (+)
LOC110528691 LOC106583835 coding downstream 584406 88777804 ~ 88781772 (+)
cass4 LOC106583834 coding downstream 595812 88790770 ~ 88852155 (+)
LOC110510506 LOC106583833 coding downstream 658138 88853096 ~ 88974945 (+)
G660598 NA non-coding upstream 76456 88082831 ~ 88084576 (+)
G660389 NA non-coding upstream 99820 88060856 ~ 88061212 (+)
G660378 NA non-coding upstream 125824 88034568 ~ 88035208 (+)
G660371 pde12 non-coding upstream 139247 88021002 ~ 88021785 (+)
G660321 NA non-coding upstream 146075 88011507 ~ 88014957 (+)
G660669 NA non-coding downstream 636 88195594 ~ 88198389 (+)
G660699 NA non-coding downstream 48285 88243243 ~ 88243708 (+)
G660702 NA non-coding downstream 52582 88247540 ~ 88248082 (+)
G660703 NA non-coding downstream 55773 88250731 ~ 88251387 (+)
G660705 NA non-coding downstream 58126 88253084 ~ 88255908 (+)
nisch LOC106583810 other upstream 773749 87346077 ~ 87387283 (+)
G659706 NA other upstream 1058762 87100464 ~ 87102270 (+)
G659136 NA other upstream 1639210 86521060 ~ 86521822 (+)
G659058 NA other upstream 1748447 86408702 ~ 86412974 (+)
G658887 NA other upstream 2264883 85895826 ~ 85896149 (+)
G660790 NA other downstream 227806 88422764 ~ 88427927 (+)
G660853 NA other downstream 427355 88622313 ~ 88689342 (+)
G660886 NA other downstream 496936 88691894 ~ 88694076 (+)
G661162 NA other downstream 622127 88817085 ~ 88817655 (+)
G661172 NA other downstream 778026 88972984 ~ 88975830 (+)

Expression


Co-expression Network