XLOC_025684


Basic Information

Item Value
gene id XLOC_025684
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 46834857 ~ 46838638 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052769
attttttttattattattattattattattttttacaaataacacatttactcatcaacaacaaaaacatggtTAGTGTCATGTGAGGACGCCTGCACAACAAAGTTGAGGGTTAAATAGCAGTTTATTAAGACAATCATTTCGCAATGAAAGGTTGAAACAGGAACAAACTGGTGGATACGGATCATTCCAAGAGTAAAGGCAGCAAACAAAGTAACAAAGCAAATGGTCAAACACGGCAGGGGAAAACAATGCTCACTAaacagtttaacaagactcagcagatGTGTATATGAGTTTATGGTCCTTGAAATCAGTCCATAATGAGCTTCTGGCTGTGTGTTTAATCAGTGAGAGTCAGGAACTGTTGTGTGCGAGTCGCATACTGGTAGTTGTAGTTGGTTACAGTAGCGTAGTGTAGCAATTGTTACAGTTAGCATGGCAACATTGTTAGCCACTGATTATTTTATAAGAATAACCTATTTTTCCATAAACAGTTTTTAGAGTTGGAATAACAGCTATTTAGAGCCATTTATACAATATGCATTATAcattacaaaaaactaaacattaaaacaaGGGTGTCAAACTCTGTGAAGTTTAAGTCCAACCCATTTACTACTCATATATAAATAAgagtagtaaaataaacattttatagtttatagtgcatgcattatatgcagcctacaaacaataggctattatttgacattattaacctcACATTTATCTTCATATGATTACTATCTTCAATAGTACTAAAAACAATTTGACAGAACTTTTGTTTATCTGTAATTATTAGCGTACAATTATGTGTCACTGTCTGAAAATACTCgaaatttcctttaaaaaacagaaaaataacgtAATACCAAAACACAagcaataactgtaaatttaatgttAGAATTTTTTATTACAGAACACATCTCACGGtatagtgaaaaaaaaagaaaattcagtaaataaaaaaatacagacaattacctgtaaagtagcatttatttttttacagagtacTTTAACCTTAATAGAATTCTGGGTTCCTCGAAAATatttgggacaaaaaaaaaattctgcacaCAAACCatctattttctatttattaaatgtatgggCCATATTTCTTAAATGTCAGATGGCTCCCTGCCTGCCTGCTGGTATCTGATTTATCGTCAGTCCCGAACTGCCTCATCTTTCTCCTGCCTGCATTTGGTCTTTGGGATTCTTTTCTTTTTGCCTTCCCGCCCTACTGTAATGGGAGACTCACAATCAATAGCGCATTAGTCTGGCCGGAAACTCCGCTAGAATTAAATATGAATGACTGAGATTGCGGCTCTACCTGCCACTGAGAGCAGGATGAGGCCTTGGGAGGGGGAGGGGAGATGGTAAATATCCCACTTACGAGGCCAAGCATCAAGCCGGGGTGTGTTACATGCTGCTGAGGTTTTTTATCCCATAGGATCATGTTTCAGGTCTTAATGCTCACTGAGTGTCGCTTTTTAAAATGCATAGACTGTATGCGATCTGTGGTTAGCAGTCATTTAAAGGTATAGCTCCCCCAAAACGGACAGTTTGGTAACCATTTattcatccttcacttgttcaaaacatgtttttctttcttctgttgaatacaaatggAGAATATTAGGAAGATAGCTAgaaacctctaaccattgactttcatagtatttgttttttctactgtggaagtctatggtttcagctttcttctaaatattTTCTATGCTGTTCAACAGAATGAAGGCACTCATAAATGTTCTTGATAATGCACTTTTTAGAGTAAATAGTGGGCACATATTAACATTAATTTTTGCTGCTAATTTACTCACACTAAAGTCATTCAGtacttttatttgtttcagtaggatgtaaaaaattaatttgtCGTTGTTGTTGGTGATTTCACTTaatttcagatttcacttaaaaagtttagtttTGGACGTTGcttaattttaaactacaaatgTTACATAAAATATTGGATTTCactgtttactttatttaataaagaaaaacaactaGCAATTTTTAGTAAAGTTAGCAATAATTTGAGGTTTAGTCAATTGAACCCAATATTTTAGGATCATCAGATTACCACGTGACGCTGTACCACAGCGTGCAATTTGAGGAGTCCATTTTGGAAAATCAGCTCGGGAGAAGACTGTTCATCTTTTGGTAAGTTATTGCAAATGTTAGATGATATTCCTTATGCCTGCTTATAAATAACGCATGTCTAAATGTTTAGATGGCAATTTACAGTATAACGAATGGACGCTTTTAATAAATGACCATGCTTGACTCAACACAACGTGTTAACCCTGATCCACACAGGAGTGATTGAAGCCAGGTCTGTCAGCTGATCTATTATATATCTGCTCCTGTTTGTATCTGTTAAGGTGCTTTTTACTGAGCTTTAAACCATTATCATTGTGGCCAAacactgttgagcatgtgaacatggTGGGAAATGCTGGTATACTCTCATTGTAAAAATTTCAGTACCGCCTGACTTTTGAaaactttaaagttttattgtattgttttgtttgtttgtttttgtgttgttttttcgattaaattaataatcaaagtatatttataagtaaatataagtaaaatttggtaattttcttttttttaagatcaaAAAAGAATTCAAAGAATTGACAGCTGCTGATGTGGAGTCTACCTTTATTGAACATTTGGACAATTACACAGAACAGCTTTtccatttatttcacaaaaaggGAGGAAGTGCAGGATGCAAAATCTGTGATGTGATGAAATTGCTGGAGCAGTGTGGACATTCTCTGGGAGGTGGTGATATGTTGTCTGACTGTGTACCTGTCTGAGAACCTTGAAAATCTGATTACCATTACCTGgacACGTGTGGGGAAACGGACCAGCTGGACATTGGAGAGCACATACCAAAAACTGTGACCATACgcatacatacactacgaacaatttagcctacccaattcacctgtaccgcatgtgtttggacttgtgggggaaaccggagcacccggaggaaacccacatcaacacagggagaacatgcaaactccacacagaaacaccaactgacccagccagggctcgagccagcaaccttcttgctgtg
>TCONS_00052770
ATTGACAGCTGCTGATGTGGAGTCTACCTTTATTGAACATTTGGACAATTACACAGAACAGCTTTtccatttatttcacaaaaaggGAGGAAGTGCAGGATGCAAAATCTGTGATGTGATGAAATTGCTGGAGCAGGTATTGTTTACTGAAAATTCTGCTTGcctattttagcatttaaattttAGATGTTTATTGTCTCTACCATGTAATgcgttttaaaatattacaatttatttatatatttttttctatttgcacTCACAGTGTGGACATTCTCTGGGAGGTGGTGATATGTTGTCTGACTGTGTACCTGTCTGAGAACCTTGAAAATCTGATTACCATTACCTGGTTAGTGAATGTAGTTAATTTAGTTCACTTTCAAATGACTTTTGTAGCAGGTTTTAATTGCAAACCTGAAAATACAATTAAGCATGTAAAATGTCAATTTAGAAAgaaaaacttttttatatatatttgagtgATTTTAGTCATCTTcaattgagttaaaaaaaaactgaaaatttccTGTTTTTTAAATCACCCCAGCCAATCGAAGATGTGGGtaactttttttcttctctaGTAGAACAGTAAAGAAAATTTGGAACTGAAGCACCTGTCGTCTTTGATAAAATGCTAGTTAGCAGATGAAATTTAGTCAACAAAGACCACAGTTTAAGTTCATTTTCTTTACTTTTCTACTGAAGAAAAGTTCTGACTTTCAGGTTCTGATTGTCTTTTTTAGTTTCTtactttttcccccttttttactTGGCtgtgcctttttatttttttatgaactgatgcataatatacattttgttttattgttttgtttcaggacACGTGTGGGGAAACGGACCAGCTGGACATTGGAGAGCACATACCAAAAACTGTGACCATACgcatacatacactacgaacaatttagcctacccaattcacctgtaccgcatgtgtttggacttgtgggggaaaccggagcacccggaggaaacccacatcaacacagggagaacatgcaaactccacacagaaacaccaactgacccagccagggctcgagccagcaaccttcttgctgtg

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0043022 ribosome binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052769 False 3160 lncRNA 0.36 3 46834857 46838638
TCONS_00052770 True 1087 lncRNA 0.36 1 46837552 46838638

Neighbor

gene id symbol gene type direction distance location
XLOC_025683 NA coding upstream 31810 46798512 ~ 46803047 (+)
XLOC_025682 prkcsh coding upstream 39074 46762703 ~ 46795783 (+)
XLOC_025680 pde4a coding upstream 80127 46628885 ~ 46754730 (+)
XLOC_025681 si:dkey-248g21.1 coding upstream 197381 46635527 ~ 46637476 (+)
XLOC_025679 raver1 coding upstream 247851 46559639 ~ 46587006 (+)
XLOC_025685 NA coding downstream 269132 47107770 ~ 47109473 (+)
XLOC_025686 dnm2a coding downstream 292274 47130912 ~ 47213115 (+)
XLOC_025687 tnfsf14 coding downstream 407126 47245764 ~ 47258444 (+)
XLOC_025688 ppap2d coding downstream 483856 47322494 ~ 47387377 (+)
XLOC_025689 NA coding downstream 556897 47395535 ~ 47409399 (+)
XLOC_025429 BX649540.1 misc upstream 16585821 30248739 ~ 30249036 (+)
XLOC_025678 NA non-coding upstream 289376 46545014 ~ 46545481 (+)
XLOC_025668 dre-mir-2195 non-coding upstream 1199671 45635077 ~ 45635186 (+)
XLOC_025667 CR392042.1 non-coding upstream 1228400 45602345 ~ 45606457 (+)
XLOC_025664 NA non-coding upstream 1581325 45246037 ~ 45253532 (+)
XLOC_025690 AL928740.1 non-coding downstream 621850 47460488 ~ 47460603 (+)
XLOC_025691 NA non-coding downstream 655884 47494522 ~ 47498343 (+)
XLOC_025693 NA non-coding downstream 1201700 48040338 ~ 48041913 (+)

Expression


Co-expression Network