G661335


Basic Information

Item Value
gene id G661335
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88831729 ~ 89104274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU752541
actctggatagtatcactgctctgatagtatcactgctagtatcactactctggatagtatcactgctctggatagtatcattgctagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactgctctggataatatcactgctagtatcactactctggatagtatcactgctagtgtcactgctctggatagtatcactgctagtataactactctggatagtatcactactctggatagtatcactgctattatcactactctggatagtatcactgctcttgatagtatcactactctggatagtatcactactctggagaGTATCACTACTCtagatagtatcactactctggatagtatcactactagtatcactactctggatagtatcactactctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctctggatagtatcagtgctctggatagtatcactactctggatagtatcactactctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctcATTATTAATCTTCATGAGTAGTGCTCATGACATGTTTTTAAATTTTGGCTCATCAGACTCAGGTTGCATCAGGCTTGAATTTTCAATAATTCTGTAATCTAATCCAGACGTTCACTAATCCAGACGTTCACTAATCCAGGCCTATTTACATGCTTTATAATGCTTTTGTATGACACTTCCTGTTTTGGCTGGAAATACCTGGCTACTCGGGAGAATAGTGATTCATTTTTCAGCTGGAACATTTGTAAATTACCAGGAAAATATTAAACCCAGTCATACCTGGGTCTGAGCCGGGGTCTGGGGTGGGGCCAGTGGTAAGAGCTGCAGGCGATTGGCTGGGGCCAGGCCCTGTCGTCCAGAAAGAAAGCACATCCACCAACCACAGCTCCCTTCTACTTCCTGTTGCAGCACTGTAACCACGTCTCCCTTCCTGAAGCCCAGCTCATCACTGCACTCGGCTATGTTGTCATACAGGGCCTTAGCCAGCAGGGtctggggagaggagacaggacagCATAACACAACATAAAGTACAACACAGATTACAACACCACACAGaatacaatacaacaccacaCAGTTTACAGAACAACACtgtatacaacacaacacagtacacaACAAAATACATTATATAACACAGAATAAAGCACAACAcagtgcacaacacaacacagtacacaacacagtacacaacacaacacagtatacaacacacatttgatttgatttgatttgagtatacAACACAACATAGTACACAACGCAACACAGAATACAATATagtacacaacaacacacagtacacaacacacaacacaacaaagaatacaacacaacacagtacagaatacaacacaacacagtacagaatacaacacaacacagtacagtatacaacacaacacagtacagtatacaacacaacacagtacagtatacaacacgacacagtacagtatacaacagtacacaacacaacacacaaaataTCACAAAACAAGACAGTATGCAAAATAACGAAGTGCACAACACAACATAGtatacaacacagtacagtatacaacacaacacaacacagtatacaacacagtacagtatacaacacaacacaacacagtatacaacacagtacagtatacaaCAACAATTTGTGTTGGCCCCTTTAAACCATAACCATGTGTCATTGGTGCCAACC
>TU752540
gacctcagcgtgggagcctcttgtacTAGTATCattgctcttgatagtatcactgctctggatagtatcactgctctggatagtatcattactctggatagtatcactactagtatcattgctcttgatagtatcactgctctggatagtatcactactctggatagtaacACTACtctgatagtatcactactctgatagtatcactactctgatagtatcactactctgataGTATCagtgctctggatagtatcactgctctggatagtatcactgctctggatagtatcagtgctctggatagtatcactactctggatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactatggatagtatcactactctagatagtatcactgctctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactactagtatcactgctctggatagtatcactgctctggatagtatcactgctagtatcactgctctggat
>TU752543
gacctcagcgtgggagcctcttgtacTAGTATCattgctcttgatagtatcactgctctggatagtatcactgctctggatagtatcattactctggatagtatcactactagtatcattgctcttgatagtatcactgctctggatagtatcactactctggatagtaacACTACtctgatagtatcactactctgatagtatcactactctgatagtatcactactctgataGTATCagtgctctggatagtatcactgctctggatagtatcactgctctggatagtatcagtgctctggatagtatcactactctggatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactatggatagtatcactactctagatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtataaCTACTCtagatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactgctagtatcactgctctggatagtatcactactagtatcactactctggatagtatcactactagtatcactgctctggatagtatcactgctctggatagtatcactgcttttgatagtatcactactctgactagtatcactactctgactagtatcactactctgactagtatcactactctgactagtatcactactctagatagtatcactactctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctctggattgtatcactgctctggattgtatcactgctctggattgtattactgctctggatagtatcactgctctggattgtatcactgctctggatagtatcactagtctggatagtatcactagtctggatagtatcactagtctggatagtatcactgctctggatagtatcactgctctggatagt
>TU752542
tagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactactctggatagtataaCTGCTCTTGATattatcactactctggatagtatcactgctctggatagtatcactactctggatagtatcactgctagtatcactactctggatagtatcactgctctggatagtatcactactctggatagtatcactgctagtatcactactctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactaccctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtttcactactctggatagtatcactgctctggatagtatcactactctggatagtaacactactctggatagtaacACTACTCTGGATTGTaacactactctggatagtatcactgatagtatcactactctggatagtatcactgctctggatagtatcactgctagtatcactactctggatagtatcactactctggatagtatcactactagtAGAactgctcaaatcaaatcaaatcaaattgtatttgtcacatacacatggttagcagatgttaatgtgagtgtagcgaaatgcttgtgcttctagttccgacaatgcagtaataaccaacaagtaatctaactaacaattccaaaactactgtcttgtacacagtgtgaggggataaagaatatgtacataaggatatatgaatgagtgatggtacagagcagcataggcagatacagtagatggtatcgagtacagtatatacatatgagatgagtatgtaaacaaagtggcatagttaaagtggctagtgatacatgtattacataaggatacagtcgatgatatagagtacagtatatacgtatgcatatgagatgaataatgtagggtaagtaacattatataaggtagcattgtttaaagtggctagtgatatatttacatcatttcccatcaattcccattattaaagtggctggagttgagtaagtgtcagtgtgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttgatgtccttgatgatctttatggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcgttgtgcagacctcactaccctctggagagccttacggttgagggcggagcagttgctgtaccaggcggtgatacagcccgccaggatgctctcgattgtgcatctgtagaagtttgtgagtgcttttggtgacaaaccgaatttcttcagcctcctgaggttgaagaggcgctgctgcgccttcttcacaatgctgtctgtgtgagtggaccaattcagtttgtctgtgatgtgtatgccgaggaacttaaaacttgct
>TU752544
ggatagtagcactgctagtatcactactctggatagtatcactgctctggatagtatcactactctggatagtatcactgctctggatagtatcactactctggatagtatcactaatctggatagtatcactactctagatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcactactctggatagtatcagtgctctggatagtatcactactctggatagtatcactactagtatcactactctgatagtatcactactctagatagtatcactagtctggatagtatcactagtctGGATAGTAACACTAGTCTGGTTAGTATcacaactctggatagtatcactgcacTGGATATTATCACTGCCcgggatagtatcactgctctggatagtatcactgctgaTATCACTGCTCTGCTAGTATCACTAcactggatagtaACACTAGTCTGgttagtatcactactctggatagtatcactgcacTGGATAGCAtcactgctagtatcactgctcttgatagtatcactggcctggatagtatcactgctctggatagtatcactgccctggatagtatcactgctctggatagtatcactgctctggatagtatcactgctggTATCACTGCTctgctagtatcactactctggatagtatcactgctctgatagtatcactgctctggatagtatcactgctagtatcactgccctggctagtatcactactctggatagtatcactactctggatagtatcactgctctgatagtatcactgctctggatagtatcactgctctgatagtatcactgctctggatagtatcactgctagtatcactgccctggctagtatcactactctggatagtatcactactctggatagtatcactgctctgatagtatcactgctctggatagtatcactgctagtatcactgccctggctagtatcactactctggatagtatcactgctctgatagtatcactgctctgctagtatcactactctggatagtatcactgctctggat

Function

NR:

description
PREDICTED: uncharacterized protein C2orf16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU752541 False 1819 lncRNA 0.41 7 88831729 89104274
TU752540 False 635 lncRNA 0.41 4 88833294 89098578
TU752543 False 1082 TUCP 0.40 2 89097047 89098578
TU752542 False 1665 lncRNA 0.42 2 89099894 89102110
TU752544 True 1081 lncRNA 0.42 2 89102360 89103676

Neighbor

gene id symbol gene type direction distance location
pdcd2l LOC106583835 coding downstream 52259 88777751 ~ 88779470 (-)
LOC110528689 NA coding downstream 189180 88585172 ~ 88642549 (-)
dyrk3 LOC106583824 coding downstream 377639 88421430 ~ 88454090 (-)
LOC118965327 NA coding downstream 412129 88417178 ~ 88420395 (-)
LOC110528687 LOC106583825 coding downstream 485984 88253063 ~ 88345745 (-)
LOC110528694 LOC106583841 coding upstream 284519 89388793 ~ 89392239 (-)
LOC110528698 wnt7a coding upstream 483823 89588097 ~ 89672181 (-)
LOC110528697 LOC107727849 coding upstream 595338 89699612 ~ 89827294 (-)
hdac11 hdac11 coding upstream 782298 89886572 ~ 89946188 (-)
LOC118965398 NA coding upstream 1155379 90259653 ~ 90259806 (-)
G661334 NA non-coding downstream 285 88831156 ~ 88831444 (-)
G661332 NA non-coding downstream 6136 88825295 ~ 88825593 (-)
G661331 NA non-coding downstream 8926 88822520 ~ 88822803 (-)
G661318 NA non-coding downstream 23076 88800145 ~ 88808653 (-)
G661315 NA non-coding downstream 40450 88790807 ~ 88791279 (-)
G661454 NA non-coding upstream 17273 89121547 ~ 89125563 (-)
G661459 NA non-coding upstream 31280 89135554 ~ 89137567 (-)
G661487 NA non-coding upstream 72927 89177201 ~ 89177619 (-)
G661498 yo84 non-coding upstream 85658 89189932 ~ 89190149 (-)
G661503 NA non-coding upstream 87761 89192035 ~ 89192240 (-)
G661128 NA other downstream 71791 88759493 ~ 88759938 (-)
LOC110528667 cenpp other downstream 1537974 87114104 ~ 87293966 (-)
G659824 NA other downstream 1824437 87003736 ~ 87007292 (-)
G659543 NA other downstream 2197873 86632407 ~ 86633856 (-)
G661773 LOC106583842 other upstream 353877 89458151 ~ 89459700 (-)
G662321 NA other upstream 572815 89677089 ~ 89681607 (-)
G662500 iqsec1 other upstream 1057864 90162138 ~ 90162948 (-)
G662629 NA other upstream 1348013 90452079 ~ 90453988 (-)
G662819 NA other upstream 1638318 90742592 ~ 90764290 (-)
G661424 NA non-coding downstream 44695 89051503 ~ 89052352 (-)
G661414 NA non-coding downstream 67321 89028984 ~ 89029726 (-)
G661400 NA non-coding downstream 100306 88995303 ~ 88996741 (-)
G661390 NA non-coding downstream 119396 88975934 ~ 88977651 (-)
G661389 NA non-coding downstream 121205 88972488 ~ 88975842 (-)
G661426 LOC106583832 other downstream 35566 89053076 ~ 89061481 (-)

Expression


Co-expression Network