XLOC_025685


Basic Information

Item Value
gene id XLOC_025685
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47107770 ~ 47109473 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052771
TTTCTGGAGTTGAAAAATTAGGAGTTAGGCAAAAAAGTGTGAAAGAGTTaatttttttgagtttatttttaaactttaacacaATTTTGTGTTATGGGATACCCCTTGCTGTGTTGTATTCTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTTGATAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCGTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTTTCTAAATGTTGGATGTTTTGTAGCAGAAGTGTGTTTTGGTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGTGGCtgttttgtgcagtttttaaaaaaatgttgtggaTGTGAACAAGCTAACACTAGCTAATAATCTTTTCTTCCCCTGTGTTTCTAAAAATGTGTGTTCTGCTGTCAAAAAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCATTATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTTAgctatatttatattacattttcaatCACACTAACATAAGTTGTTAAAtaacatttatcttttttatttcaggCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTTCAGTGCGGGTGAGTTTTAGTGTAACAaagagtatttttaaaaatatataataataataataataataataacagtcattttaaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCACACTAATGATGGTAGatatttaagaacatttttatagattttgAAAGTTGGTCTCATGACTCAGAGTGAAAGTGTGCATTTCAGAACCATTTGCTGAcacgtgttgttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTGAAGTGCCCTCCTCCCCAAGTCTGACAGATACATTGTCTTTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGTccaaaaaatgtaagttttttttaaacttccaTATACATAGATATTATACcgtaaacattacaaaataacgttacaaaatgaatgcattttaaagtaaaaaaatagtataaacacagttattagattaagttttttttgttaaaaaaatattaattttggtTATCtttctaaatacttttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTAAGGAGtatgacaagatatttttttgcTGCTTCTGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052771 True 1704 lncRNA 0.33 1 47107770 47109473

Neighbor

gene id symbol gene type direction distance location
XLOC_025684 NA coding upstream 269132 46834857 ~ 46838638 (+)
XLOC_025683 NA coding upstream 304723 46798512 ~ 46803047 (+)
XLOC_025682 prkcsh coding upstream 311987 46762703 ~ 46795783 (+)
XLOC_025680 pde4a coding upstream 353040 46628885 ~ 46754730 (+)
XLOC_025681 si:dkey-248g21.1 coding upstream 470294 46635527 ~ 46637476 (+)
XLOC_025686 dnm2a coding downstream 21439 47130912 ~ 47213115 (+)
XLOC_025687 tnfsf14 coding downstream 136291 47245764 ~ 47258444 (+)
XLOC_025688 ppap2d coding downstream 213021 47322494 ~ 47387377 (+)
XLOC_025689 NA coding downstream 286062 47395535 ~ 47409399 (+)
XLOC_025690 AL928740.1 coding downstream 351015 47460488 ~ 47460603 (+)
XLOC_025429 BX649540.1 misc upstream 16858734 30248739 ~ 30249036 (+)
XLOC_025678 NA non-coding upstream 562289 46545014 ~ 46545481 (+)
XLOC_025668 dre-mir-2195 non-coding upstream 1472584 45635077 ~ 45635186 (+)
XLOC_025667 CR392042.1 non-coding upstream 1501313 45602345 ~ 45606457 (+)
XLOC_025691 NA non-coding downstream 385049 47494522 ~ 47498343 (+)
XLOC_025693 NA non-coding downstream 930865 48040338 ~ 48041913 (+)
XLOC_025697 NA non-coding downstream 1329593 48439066 ~ 48442896 (+)

Expression


Co-expression Network