G661197 (LOC106562215)


Basic Information

Item Value
gene id G661197
gene name LOC106562215
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88896706 ~ 88901356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU752371
GAGTGTTCAGAGTCACCGCCTGGATAAAGAGATTCATAGCCAATGCTCGTACAACCATAAAGATGCAAGGTGAACTGACTGCTGACGAACTGTTCGATGCAGAAAAGTACTGGATTaaggtaacacaacaacagagttTCGGACAGGAGATCAAACTACTGAAGGCAGGAAAAAGCCTAAACAATGACTGTAAAATCAGAGAACTGAAACCTTTCCTGGACGAACACGAAC

Function

NR:

description
uncharacterized protein LOC110517863

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU752371 True 231 lncRNA 0.43 2 88896706 88901356

Neighbor

gene id symbol gene type direction distance location
cass4 LOC106583834 coding upstream 44551 88790770 ~ 88852155 (+)
LOC110528691 LOC106583835 coding upstream 114934 88777804 ~ 88781772 (+)
pdrg1 pdrg1 coding upstream 370260 88517435 ~ 88528083 (+)
LOC110528688 LOC106583827 coding upstream 655642 88238927 ~ 88241064 (+)
LOC110528686 NA coding upstream 769208 88120869 ~ 88127498 (+)
LOC118965328 NA coding downstream 73346 88974702 ~ 89002957 (+)
LOC110529064 phf2 coding downstream 80362 88981718 ~ 89115525 (+)
LOC118965329 NA coding downstream 152791 89053940 ~ 89055968 (+)
ptpdc1a LOC106583842 coding downstream 497519 89398875 ~ 89474883 (+)
LOC110529066 LOC106583848 coding downstream 578481 89479837 ~ 89492439 (+)
G661190 NA non-coding upstream 18020 88878363 ~ 88878686 (+)
G661181 NA non-coding upstream 56306 88840001 ~ 88840400 (+)
G661154 NA non-coding upstream 62619 88833012 ~ 88834087 (+)
G661168 NA non-coding upstream 67773 88828623 ~ 88828933 (+)
G661167 NA non-coding upstream 69428 88826984 ~ 88827278 (+)
G661203 NA non-coding downstream 5557 88906913 ~ 88909728 (+)
G661208 NA non-coding downstream 33422 88934778 ~ 88935037 (+)
G661229 NA non-coding downstream 113485 89014841 ~ 89017184 (+)
G661233 NA non-coding downstream 121034 89022390 ~ 89022761 (+)
G661162 NA other upstream 79051 88817085 ~ 88817655 (+)
G660886 NA other upstream 202630 88691894 ~ 88694076 (+)
G660853 NA other upstream 207364 88622313 ~ 88689342 (+)
G660790 NA other upstream 468779 88422764 ~ 88427927 (+)
nisch LOC106583810 other upstream 1509423 87346077 ~ 87387283 (+)
G661172 NA other downstream 71628 88972984 ~ 88975830 (+)
G661489 NA other downstream 277937 89179293 ~ 89180204 (+)
G661491 NA other downstream 279458 89180814 ~ 89182037 (+)
G661541 NA other downstream 354404 89255760 ~ 89256424 (+)

Expression


Co-expression Network