G661389


Basic Information

Item Value
gene id G661389
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 88972488 ~ 88975842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU752611
ATTTTTTCAATAGCTACATGAGTGCAGATCAAGTCTTGATATCATGAATTGGATTCCTTCCCATAAATGCATGTTTTATTCAGATTGAACCTACTGGTTTTGGGTTGTTTTCCCAACTAGCTCTCAGTCTCGCATCACAAGTAGACGTTTATCCATTCTTTCTGAAAAGTCAAATTCTGAAGCGTTTAAGGTTAACTTTAACTCCGGATGGAAAGGGTAAAGATTTAGGGTAGGCTTAAAACtaaaatatcaaaaacaactttctatcgctggattcgaCCTTGCAACCTTTTGAATCAAGTTtacgcccatccaccatccccaccctagcaaaaccaaaacctacttgaaggtaacagcgctcactgttgcccctagtggccagtttcccTGTCATCGCTCGACGTCCTCAGACATAgatggacgtcgaatactgacttgaaTAAAgggtgacatggctggttttccacCAACGGTGACCCAAGAGGAGGACTGTAGGCTATGCACGCCGAGTGGGACGGCTTGTGGACTGTCCTCTGAGGGAAGATCAAACTTCATCGCAGAGCCCCAATACAGAGGAAGAAGATACATTTTACAGGGATGCCTTGATGACATGGGACTCCCTACCTGCCCTTGGACATGCTGACCAGTCACCACCACTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTTCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCagtcaccaccacctcctctgacCAGaatcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGAGTCGCCAACACCTCCTCTGACCAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCAGAGTCACCAACACCTCCTCTGACCagtcaccaccacctcctctgacCAGaatcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGAGTCGCCACCACCTCCTCTGACCAGagtcaccaccacctcctctgacCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCTCTGACCAGAGTCGCCACCACCTCCCCTGACCAGAGTCACCACCACCTCCCCTGACCAGAGTCACCACCACCTCCCCTGACCAGAGTCACCACCACCTCCCCTGACCAGagtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGtgtcaccaccacctcctctgacCAGagtcaccaccacctcctctgacCAGAGTCGCCACCACCTCCCCTGACCAGAGTCGCCACCACCTCCCCTGACCAGAGTCGCCACCACCTCCCCTGACCAGAGTCGCCACCACCTCCTCTGACCATCTACTGTACAGCTATGAACTTCCAGATCCTCATGACCACATGCTGGAAGCTTCAAGAAGAACTCAGACTTGATCTaagttaaataataaaaaatgaaataaataaaacacactaATTTAGCTGATCTAATCAGACTGATCTAGCTAGTAGCAACTATTCTAACCTAGTTTTATTTTTCAATTActtgttgtatttatttaaaggGGACCAAAATGGAAAAACGTTTTCGTGATTTTTTAAACGCATTATCCACGTGTGGTTGTTTTTAAATTATCAAATTTTCATCTATCcacgtcaaaagtagtgcactatatacagactagggtgccattggggaagCATTCTGTGACTCCATCTGCTTCTCTGTTGTTAAAACTCTCAAAATGTTATTTACTGTGACAACAAAGTTACAATGGCAAATATATGGCGCCAAGTACATACTGCTGGTGCATCTTAACCTATAAAGGAACTAAAAGAGACAAAAGCATTGTAGTTTCGGCTTCAGTATTATCTCAAAGGGATTAGAGTACCCAGTCAGACATGGCCTGCTTCTCAAactgcatcctattccctacatagtgcactacttttgaccagagcccagttATCAACCCTATGGgtgcctggtcaaaagtactgtatatagggaatacatttgggacacaaaccatGGTCATATCACGATAGTAATCATGTCGATatcagtggagagagagtggagtgacTGGCCCAGTATTTAGTGACTGGTAGTATTTATTCTGTTTGGTACTGGTCTGCGCAGATCTCTTGTTAAAAATAAGAAATCCTCAtcattctggggggggggggggtttatctgGTTGACATCATCGAAAAAGGGGGTCTGAATTTAATGTTCTCATAGatgtattccaaatggcaccattttgccgatgttgtgcactactttagaccagaggcctatgggaAGTATAACCctgagggctctggtcaaaactactgcactatatagggagctgTTTGGAATGCGTACAATATGGAACAGTGACTGTAGATTTCCTTACATCCTCTCACTCGTTCTTCACCCTctctacaaaaaaaatatttttttttttactcttctGTTTGTAAGACAGAGGCGGCTGCGCTCAGAGGTTCTGCTGCGTCTCTGAGACAGGCGCCGTCTGCATTTAGTGCATTTAGGCGGGGGTTAGTATTGCACATCTTGGGGTTGCTGCTAAAGGCACTTTCTGGTTGAATATTCACAGCCCTGCTTTCTCTCACCTCCATGACTTGACCTTTCAACTGCTCTACCtcactct

Function

NR:

description
PREDICTED: constitutive coactivator of PPAR-gamma-like protein 1 homolog isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU752611 True 3335 lncRNA 0.50 2 88972488 88975842

Neighbor

gene id symbol gene type direction distance location
pdcd2l LOC106583835 coding downstream 193018 88777751 ~ 88779470 (-)
LOC110528689 NA coding downstream 329939 88585172 ~ 88642549 (-)
dyrk3 LOC106583824 coding downstream 518398 88421430 ~ 88454090 (-)
LOC118965327 NA coding downstream 552888 88417178 ~ 88420395 (-)
LOC110528687 LOC106583825 coding downstream 626743 88253063 ~ 88345745 (-)
LOC110528694 LOC106583841 coding upstream 412951 89388793 ~ 89392239 (-)
LOC110528698 wnt7a coding upstream 612255 89588097 ~ 89672181 (-)
LOC110528697 LOC107727849 coding upstream 723770 89699612 ~ 89827294 (-)
hdac11 hdac11 coding upstream 910730 89886572 ~ 89946188 (-)
LOC118965398 NA coding upstream 1283811 90259653 ~ 90259806 (-)
G661377 LOC106583833 non-coding downstream 40500 88920890 ~ 88931988 (-)
G661369 NA non-coding downstream 69848 88895354 ~ 88902640 (-)
G661370 NA non-coding downstream 74625 88895970 ~ 88897863 (-)
G661338 NA non-coding downstream 136518 88834194 ~ 88835970 (-)
G661334 NA non-coding downstream 141044 88831156 ~ 88831444 (-)
G661390 NA non-coding upstream 92 88975934 ~ 88977651 (-)
G661400 NA non-coding upstream 19461 88995303 ~ 88996741 (-)
G661414 NA non-coding upstream 53142 89028984 ~ 89029726 (-)
G661424 NA non-coding upstream 75661 89051503 ~ 89052352 (-)
G661454 NA non-coding upstream 145705 89121547 ~ 89125563 (-)
G661128 NA other downstream 212550 88759493 ~ 88759938 (-)
LOC110528667 cenpp other downstream 1678733 87114104 ~ 87293966 (-)
G659824 NA other downstream 1965196 87003736 ~ 87007292 (-)
G659543 NA other downstream 2338632 86632407 ~ 86633856 (-)
G661426 LOC106583832 other upstream 77234 89053076 ~ 89061481 (-)
G661335 NA other upstream 121205 88831729 ~ 89104274 (-)
G661773 LOC106583842 other upstream 482309 89458151 ~ 89459700 (-)
G662321 NA other upstream 701247 89677089 ~ 89681607 (-)
G662500 iqsec1 other upstream 1186296 90162138 ~ 90162948 (-)

Expression


Co-expression Network