XLOC_025687 (tnfsf14)


Basic Information

Item Value
gene id XLOC_025687
gene name tnfsf14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 47245764 ~ 47258444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050559
ataaaatatcaCTGTTAGCTTTTTTCattgcacattttttttccttctcataTTTGATTGCACGTTTTCCCTCACCCACATAATTTCTTGAGCATGCATTATTGGCTTTACCCATCACTTGTGAGACAGCACTAACAGGTACAGTTTTGTTTCCAGATACTGAAAGTGGtctgacgtttttttttttttttttctcacttgcACCGTCCGCCCACCCAAGGGCTTTATGAGTGATGGTTATCTCTCAGTCTCATTGTGCAGTGGGTCTTTTCACACTACTTTGGATGTGCAGTTGTCATTTCTGAATTGGCCAAAGACGCTGTGCATATGGCTTCAGGTAACGTGTCGTATCCTTCAGTTTTTGTGGTTGACGGACACATGAGACCCCCTCCTCTACCCCCCAAGCCGGCCAGTAGACATCGGAAGGAAGCCATCCAGACTTTGCTGTTCATCCTGGTGACTTTGGCTCTGTTTGGCATGGCTGTGGAAGCCTGCTTCATCTACCGTCTGTACTCAGTCAAAGAAACTATTATCCGGACAGATGAATCACACACTGCCATGAGCAAACAAGACAAAGTTGTTGCAGAACCTAAAAAAAATCGTCTTGGAGAAATGAAGCCATCAAAACCAATGGGACAGCTGACAACTGGTTTGCGTGTAAATAATGAAGTTGTGCTGTGGCATGAGAATCATGACTCCATCCTTCACTTCATCAAACACAAATCACAGGAGGGAAAACTCATCATAGAGAAGGAGGGATTCTATTCTGTCTACTCTAAGATCAACTACAAGGAGGAGAGCATCTTATTCACCCACTCTGTAGTCAGAAATACACAGCGATTCGCAGGCGAAGAGATTCTGCTTTTGCAATCCTCCAGCTTACATCCAAAAATCCCAAGACCAAGCATCGAAAACAGCTTTCTCAATGGCGTGTTTCACCTTTACAAAGACGATGCGATTTTTGTCAGGGTAAAAAACTGCACAATTGTGTTGTCCAACTCTGCTGAAAACTACTTTGGGTTGTTTATGATTTAACTGAATTCTGAAGTCTGCCTTTTATCATATGACATTTAATAGCTTTGACGGGAAATTACATAATAGAAGGAGCAATATTTAGCTTTCCTTTGAGCCTGTCCTCAGATGTAAAACTTCTTTTGGACAAACATCTTTTTCTTTTAGAGCCACTAGCCTATGGAATAATTTTACAACAGAACAGATCACATGCACAGACTACAGAATGTTTTCAAGCCTGACCAGGAGGTAGTTTTTATGGAGGCAGATTAGtctaacacaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttacaaaatgaaattcacacgtccacaacacaattcacatttacaaaattaaatttgtaaatttgtaaacacaATTTGTGAGTTtacaagtaaaaatcataaatattttcggcaaatgaattggatttgcatatttatgaattgtgtgttGAGTTTATGAATTTGATCTGTGAATTCTCGAATCatgttttgtatttataaattggatttgtgtgtttatggaGCGTGATTTGAATTTAcgaaatggatttgtgtattttcaaatcatgttttgaattgacgaattggatttgtgtttataaatcgtgttttgaatttacaaaatggttttgtgtgtttatgaagcttgttttgaatttacaaattggttttgtgtatttttaaatcatgtttgaatttacaaattggactGGTGTgtttataaatcgtgttttgaattatgaattagatttgtgtgtttataaagcgtgttttaaatttatgaattgagGCGGcgcagttgcgcagtaggtagtgctgtcgcctcaaagcaagaaggtcgctggttcgagcctcggatgggtcagttggcgtttctgtaaggagtttgcatgttctctctgtgttcgagtgggtttcctccaggtgctccggtttccctcacaagacatgtggtacaggtgaattgggtaagctaaaaaaattgtctgtagtatatgtgtgtgtgaataagagtgcatgggtgtttcccagtgatgggttacagttgtaagggcatccgctatgtaaaacatgtgctcattccgctgtggtgacgccagattaataatgaatgaacaaatgaatttacattttttttcaatgtaatagGATACTAATAGGATGTTCATGCTGAACATTATTCTAATGGTATGaaaaatgcaaaagtaactcacgTAAGTAACATAATGTATTACTTTCCATATaatgtaactaagtaatgcaactagttacttttttggggagtaactcaatattgtaatgtgttactttcaattaaataaaaataaataaattcaataaattttTGCATCTAAAAATAAACTAGACACTGAACGAATGATGAAATGAATAGCGCATTTAGGTGGACAAACCTTTCTCAATATTTTGTGACGAGAGAGTTTCTTGTACAGGATCACAGGATGGATGTTTTTATTCCTAAACATAAAACTAACAAATtatgagagtaaaaaaaaacaaaaaaaacagcctgatctcacgaggacgcataactattttacgttttgtaagtttagcggctaattcgtacgagttcagccatacgaaaatgtatgattttaaaaaggagacgtggcatCCAACCCCACTCCTAAACCTTACCATCATTGgaagatgagcaaatcgtactaaactgtacaaaagagattgtacgaattagcaactaaatcaaaGTTCCGAAttactgtgagattgtgttgaaaaaaacttaaaaactttatttgttttgcaCTTAGCAGCTTCTGCTCTTTAGATCCTTGTTAAAGGATCACTATTTCAAAATAAAGCAACTGAAGTTGTAATTTTTATAGGATTTTAGTTCAGTAAATGTAATATTGGTAACTTGTGTGCATTGAATGTATAAGGGTTAGGgtaataattattgtaataaacaaaTCTATTTTCGACTAGAAATGTACAATTTATATGCTATGTGTTTtggttattcatttaattttcaatGGTGAAATCATCTAATTATGTAACTAGtgtttaaataaattcaataaatgttataaaaagaACATGAgctttttattacactttaaattTGTTCAAAATACTGCTGCATATTTTAATATTGCAGTTCCTTTTGTATGTATCTTTGCATGTCATATTTTTGTATTCTTTTCAGATACGTggttacaaatattttattaaattaagtattgattatatttttaatacactttTTGTCTGAAAACtgttttctaataaaataaataaatttatttcacTCTGCttcaaaatttttgttttttgtttgcaattatttaatGTTGTAGTAAATTTtagtggaaacacacacacacacacacacacacacacacacacacacacatacacacacacacatatatatatatatatatatatatatatatatatatatata

Function

symbol description
tnfsf14 Predicted to enable tumor necrosis factor receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; liver; and pleuroperitoneal region. Orthologous to human TNFSF14 (TNF superfamily member 14).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04061 Viral protein interaction with cytokine and cytokine receptor
ko05168 Herpes simplex virus 1 infection
ko04052 Cytokines and growth factors
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-101109-3 Predicted to enable tumor necrosis factor receptor binding activity. Predicted to act upstream of or within immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gill; heart; liver; and pleuroperitoneal region. Orthologous to human TNFSF14 (TNF superfamily member 14).

Ensembl:

ensembl_id ENSDARG00000111357

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050559 True 3537 mRNA 0.33 4 47245764 47258444

Neighbor

gene id symbol gene type direction distance location
XLOC_025686 dnm2a coding upstream 32649 47130912 ~ 47213115 (+)
XLOC_025685 NA coding upstream 136291 47107770 ~ 47109473 (+)
XLOC_025684 NA coding upstream 407126 46834857 ~ 46838638 (+)
XLOC_025683 NA coding upstream 442717 46798512 ~ 46803047 (+)
XLOC_025682 prkcsh coding upstream 449981 46762703 ~ 46795783 (+)
XLOC_025688 ppap2d coding downstream 64050 47322494 ~ 47387377 (+)
XLOC_025689 NA coding downstream 137091 47395535 ~ 47409399 (+)
XLOC_025690 AL928740.1 coding downstream 202044 47460488 ~ 47460603 (+)
XLOC_025691 NA coding downstream 236078 47494522 ~ 47498343 (+)
XLOC_025692 LO018532.1 coding downstream 293909 47552353 ~ 47554777 (+)
XLOC_025429 BX649540.1 misc upstream 16996728 30248739 ~ 30249036 (+)
XLOC_025678 NA non-coding upstream 700283 46545014 ~ 46545481 (+)
XLOC_025668 dre-mir-2195 non-coding upstream 1610578 45635077 ~ 45635186 (+)
XLOC_025693 NA non-coding downstream 781894 48040338 ~ 48041913 (+)
XLOC_025697 NA non-coding downstream 1180622 48439066 ~ 48442896 (+)

Expression


Co-expression Network