G661559


Basic Information

Item Value
gene id G661559
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 89304207 ~ 89311567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU752829
GATGCTTTTTTGCAAaaaaggaagccgattctagattacattttggattggagatgcttaatgtgtgtctggaaggagagtttacagtctaaccagacacctaggtatttgtagatatccatatattctaagtcagaaccgtccagagtagtgatgttggatgggcgggcaggtgctggtagcgatcagttgaagagcatgcatttagtttcacATGCATTTAAgtgcaattggaggccacggaaggagagttgtatggcattgaagctcttctggaggttagttaacacagtgtccaaagaagggccagaggaatacagaatggtgtcaactgcgtagaggtggatcagagaatcaccagcagcaagagcgacatcattgatgtatacagagaaaagagtcggcctgagaattgaacaccgtggcacccccatagagactgccagaggtttggacaacaggccctccgatttgacacactgaactttatctgagaagtagttggtgaaccaggcgaggcagtcatttgagaaaccaaggcggttgagtgggcagctgggaggaggtgctcatattttccatggactttacaagactttacttacttacttactttacTGTCcaagaactttttggagtttgtgctgcaggatgcaaatttctgttaggaaagcaaaggctagctttttcaaactgcctgtgtatattggttcctaacttccctgaaaagttgcatatttcgggggctattcgatgctaatgcagaacgcacAGTTTTTCTGCTGGTCAAGAGCAGtaaggtctggagagaaccacgGGCTGTAcctattcctggttctacattttttgaatgtggcatgcttatttaagattttGGGGAAACCACTTTTAAAGGCATTTTCTACTGGTGGAATGAGGTCAagatcattccaggatacccgagccaggttgattagaaaggcctgctcgctgaagtgttttagggagtgttagacagacccattacggacacaaGCAATggggcagtgatcgctgagatctttgttgaagacagcagaggtgtatttggagggcagggtggttaggatgatatctatgagtgtGCCTGTGTTTACatatttggggttgtacctggtgggttcattgatcatttgtgtgagattgagggcatcaagctcaGATTGTAGGttggccagggtgttaagcatatcccagtttaggtcacctaacagcacgagctctcaAGATAGAtgtggggcaatcaattcacatatggtgtcgagggcacagctgggtggagaaggtggtctatagcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU752829 True 1317 lncRNA 0.45 2 89304207 89311567

Neighbor

gene id symbol gene type direction distance location
LOC110529064 phf2 coding upstream 188682 88981718 ~ 89115525 (+)
LOC118965329 NA coding upstream 248239 89053940 ~ 89055968 (+)
LOC118965328 NA coding upstream 325613 88974702 ~ 89002957 (+)
LOC110510506 LOC106583833 coding upstream 329262 88853096 ~ 88974945 (+)
cass4 LOC106583834 coding upstream 452052 88790770 ~ 88852155 (+)
ptpdc1a LOC106583842 coding downstream 87308 89398875 ~ 89474883 (+)
LOC110529066 LOC106583848 coding downstream 168270 89479837 ~ 89492439 (+)
iqsec1b iqsec1 coding downstream 784455 90096022 ~ 90162648 (+)
pparg LOC106583866 coding downstream 978534 90290101 ~ 90409035 (+)
tsen2 tsen2 coding downstream 1102152 90413719 ~ 90459450 (+)
G661520 NA non-coding upstream 94402 89209546 ~ 89209805 (+)
G661511 NA non-coding upstream 104175 89199474 ~ 89200032 (+)
G661500 NA non-coding upstream 112940 89191061 ~ 89191267 (+)
G661304 NA non-coding upstream 141402 89162360 ~ 89162805 (+)
G661291 NA non-coding upstream 142318 89142031 ~ 89161889 (+)
G661562 NA non-coding downstream 9202 89320769 ~ 89321532 (+)
G661631 NA non-coding downstream 55806 89367373 ~ 89368412 (+)
G661636 NA non-coding downstream 61219 89372786 ~ 89373072 (+)
G661653 NA non-coding downstream 74251 89385818 ~ 89386054 (+)
G661662 NA non-coding downstream 81452 89393019 ~ 89394799 (+)
G661541 NA other upstream 47783 89255760 ~ 89256424 (+)
G661491 NA other upstream 122170 89180814 ~ 89182037 (+)
G661489 NA other upstream 124003 89179293 ~ 89180204 (+)
G661172 NA other upstream 328377 88972984 ~ 88975830 (+)
G661692 NA other downstream 156417 89467984 ~ 89471391 (+)
G661696 NA other downstream 158262 89469829 ~ 89470119 (+)
G662026 NA other downstream 687710 89999277 ~ 89999911 (+)
LOC110528704 cnbp other downstream 1207318 90518807 ~ 90562974 (+)
cfap92 LOC106583852 other downstream 1500369 90740664 ~ 90885403 (+)

Expression


Co-expression Network